https://github.com/mrc-ide/spatialbranchr

What the Package Does (One Line, Title Case)
https://github.com/mrc-ide/spatialbranchr

Last synced: 25 days ago
JSON representation

What the Package Does (One Line, Title Case)

• Host: GitHub
• URL: https://github.com/mrc-ide/spatialbranchr
• Owner: mrc-ide
• License: other
• Created: 2020-01-20T11:58:10.000Z (almost 5 years ago)
• Default Branch: master
• Last Pushed: 2022-09-30T15:13:09.000Z (over 2 years ago)
• Last Synced: 2024-12-06T19:58:57.757Z (about 1 month ago)
• Language: C++
• Homepage: https://mrc-ide.github.io/spatialbranchr/
• Size: 11 MB
• Stars: 0
• Watchers: 3
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

Awesome Lists containing this project

README

        
spatialbranchr implements a spatially explicit branching process

framework. Briefly, spatialbranchr can 

1. jointly estimate relative movement between locations and the reproduction numbers in these

locations given incidence time-series; 

2. jointly estimate reporduction

numbers in multiple locations using a spatially epxlicit branching

process given time-series of incidence and information on movement;

3. project incidence under this framework. 

The methodology is available [here](https://www.nature.com/articles/s41746-021-00442-3).

To install, use:

```{r}

remotes::install_github('mrc-ide/spatialbranchr')

```