https://github.com/mschubert/overlay

Gentoo overlay for (mainly scientific) software that's not quite ready for the main tree
https://github.com/mschubert/overlay

bioinformatics ebuilds gentoo gentoo-overlay science

Last synced: 9 months ago
JSON representation

Gentoo overlay for (mainly scientific) software that's not quite ready for the main tree

• Host: GitHub
• URL: https://github.com/mschubert/overlay
• Owner: mschubert
• Created: 2018-02-08T18:57:24.000Z (over 8 years ago)
• Default Branch: master
• Last Pushed: 2023-12-19T12:37:05.000Z (over 2 years ago)
• Last Synced: 2023-12-19T15:15:35.719Z (over 2 years ago)
• Topics: bioinformatics, ebuilds, gentoo, gentoo-overlay, science
• Language: Shell
• Homepage:
• Size: 286 KB
• Stars: 0
• Watchers: 2
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

Awesome Lists containing this project

README

          
Gentoo overlay

==============

![pkgcheck](https://github.com/mschubert/overlay/actions/workflows/pkgcheck.yml/badge.svg)

Gentoo overlay for software that's not quite ready for the main tree

Packages maintained in the [`science`](https://github.com/gentoo/sci) overlay

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[![bx-python](https://repology.org/badge/version-for-repo/gentoo_ovl_science/bx-python.svg?header=bx-python)](https://repology.org/project/bx-python/versions)

[![deeptools](https://repology.org/badge/version-for-repo/gentoo_ovl_science/deeptools.svg?header=deeptools)](https://repology.org/project/deeptools/versions)

[![deeptools-intervals](https://repology.org/badge/version-for-repo/gentoo_ovl_science/deeptools-intervals.svg?header=deeptools-intervals)](https://repology.org/project/deeptools-intervals/versions)

[![fastp](https://repology.org/badge/version-for-repo/gentoo_ovl_science/fastp.svg?header=fastp)](https://repology.org/project/fastp/versions)

[![gffutils](https://repology.org/badge/version-for-repo/gentoo_ovl_science/gffutils.svg?header=gffutils)](https://repology.org/project/gffutils/versions)

[![multiqc](https://repology.org/badge/version-for-repo/gentoo_ovl_science/multiqc.svg?header=multiqc)](https://repology.org/project/multiqc/versions)

[![python:anndata](https://repology.org/badge/version-for-repo/gentoo_ovl_science/python:anndata.svg?header=python:anndata)](https://repology.org/project/python:anndata/versions)

[![python:array-api-compat](https://repology.org/badge/version-for-repo/gentoo_ovl_science/python:array-api-compat.svg?header=python:array-api-compat)](https://repology.org/project/python:array-api-compat/versions)

[![python:asciitree](https://repology.org/badge/version-for-repo/gentoo_ovl_science/python:asciitree.svg?header=python:asciitree)](https://repology.org/project/python:asciitree/versions)

[![python:colormath](https://repology.org/badge/version-for-repo/gentoo_ovl_science/python:colormath.svg?header=python:colormath)](https://repology.org/project/python:colormath/versions)

[![python:colormath2](https://repology.org/badge/version-for-repo/gentoo_ovl_science/python:colormath2.svg?header=python:colormath2)](https://repology.org/project/python:colormath2/versions)

[![python:dask](https://repology.org/badge/version-for-repo/gentoo_ovl_science/python:dask.svg?header=python:dask)](https://repology.org/project/python:dask/versions)

[![python:datrie](https://repology.org/badge/version-for-repo/gentoo_ovl_science/python:datrie.svg?header=python:datrie)](https://repology.org/project/python:datrie/versions)

[![python:donfig](https://repology.org/badge/version-for-repo/gentoo_ovl_science/python:donfig.svg?header=python:donfig)](https://repology.org/project/python:donfig/versions)

[![python:dpath](https://repology.org/badge/version-for-repo/gentoo_ovl_science/python:dpath.svg?header=python:dpath)](https://repology.org/project/python:dpath/versions)

[![python:hdbscan](https://repology.org/badge/version-for-repo/gentoo_ovl_science/python:hdbscan.svg?header=python:hdbscan)](https://repology.org/project/python:hdbscan/versions)

[![python:llvmlite](https://repology.org/badge/version-for-repo/gentoo_ovl_science/python:llvmlite.svg?header=python:llvmlite)](https://repology.org/project/python:llvmlite/versions)

[![python:lzstring](https://repology.org/badge/version-for-repo/gentoo_ovl_science/python:lzstring.svg?header=python:lzstring)](https://repology.org/project/python:lzstring/versions)

[![python:numba](https://repology.org/badge/version-for-repo/gentoo_ovl_science/python:numba.svg?header=python:numba)](https://repology.org/project/python:numba/versions)

[![python:numcodecs](https://repology.org/badge/version-for-repo/gentoo_ovl_science/python:numcodecs.svg?header=python:numcodecs)](https://repology.org/project/python:numcodecs/versions)

[![python:plac](https://repology.org/badge/version-for-repo/gentoo_ovl_science/python:plac.svg?header=python:plac)](https://repology.org/project/python:plac/versions)

[![python:py2bit](https://repology.org/badge/version-for-repo/gentoo_ovl_science/python:py2bit.svg?header=python:py2bit)](https://repology.org/project/python:py2bit/versions)

[![python:pyaml-env](https://repology.org/badge/version-for-repo/gentoo_ovl_science/python:pyaml-env.svg?header=python:pyaml-env)](https://repology.org/project/python:pyaml-env/versions)

[![python:pybedtools](https://repology.org/badge/version-for-repo/gentoo_ovl_science/python:pybedtools.svg?header=python:pybedtools)](https://repology.org/project/python:pybedtools/versions)

[![python:pyBigWig](https://repology.org/badge/version-for-repo/gentoo_ovl_science/python:pybigwig.svg?header=python:pyBigWig)](https://repology.org/project/python:pybigwig/versions)

[![python:pyfaidx](https://repology.org/badge/version-for-repo/gentoo_ovl_science/python:pyfaidx.svg?header=python:pyfaidx)](https://repology.org/project/python:pyfaidx/versions)

[![python:snakemake-interface-common](https://repology.org/badge/version-for-repo/gentoo_ovl_science/python:snakemake-interface-common.svg?header=python:snakemake-interface-common)](https://repology.org/project/python:snakemake-interface-common/versions)

[![python:snakemake-interface-executor-plugins](https://repology.org/badge/version-for-repo/gentoo_ovl_science/python:snakemake-interface-executor-plugins.svg?header=python:snakemake-interface-executor-plugins)](https://repology.org/project/python:snakemake-interface-executor-plugins/versions)

[![python:snakemake-interface-report-plugins](https://repology.org/badge/version-for-repo/gentoo_ovl_science/python:snakemake-interface-report-plugins.svg?header=python:snakemake-interface-report-plugins)](https://repology.org/project/python:snakemake-interface-report-plugins/versions)

[![python:snakemake-interface-storage-plugins](https://repology.org/badge/version-for-repo/gentoo_ovl_science/python:snakemake-interface-storage-plugins.svg?header=python:snakemake-interface-storage-plugins)](https://repology.org/project/python:snakemake-interface-storage-plugins/versions)

[![python:spectra](https://repology.org/badge/version-for-repo/gentoo_ovl_science/python:spectra.svg?header=python:spectra)](https://repology.org/project/python:spectra/versions)

[![python:stopit](https://repology.org/badge/version-for-repo/gentoo_ovl_science/python:stopit.svg?header=python:stopit)](https://repology.org/project/python:stopit/versions)

[![python:throttler](https://repology.org/badge/version-for-repo/gentoo_ovl_science/python:throttler.svg?header=python:throttler)](https://repology.org/project/python:throttler/versions)

[![python:rchitect](https://repology.org/badge/version-for-repo/gentoo_ovl_science/python:rchitect.svg?header=python:rchitect)](https://repology.org/project/python:rchitect/versions)

[![python:reretry](https://repology.org/badge/version-for-repo/gentoo_ovl_science/python:reretry.svg?header=python:reretry)](https://repology.org/project/python:reretry/versions)

[![python:rich-click](https://repology.org/badge/version-for-repo/gentoo_ovl_science/python:rich-click.svg?header=python:rich-click)](https://repology.org/project/python:rich-click/versions)

[![python:yte](https://repology.org/badge/version-for-repo/gentoo_ovl_science/python:yte.svg?header=python:yte)](https://repology.org/project/python:yte/versions)

[![python:zarr](https://repology.org/badge/version-for-repo/gentoo_ovl_science/python:zarr.svg?header=python:zarr)](https://repology.org/project/python:zarr/versions)

[![radian](https://repology.org/badge/version-for-repo/gentoo_ovl_science/radian.svg?header=radian)](https://repology.org/project/radian/versions)

[![rdkit](https://repology.org/badge/version-for-repo/gentoo_ovl_science/rdkit.svg?header=rdkit)](https://repology.org/project/rdkit/versions)

[![snakemake](https://repology.org/badge/version-for-repo/gentoo_ovl_science/python:snakemake.svg?header=snakemake)](https://repology.org/project/python:snakemake/versions)