https://github.com/mschubert/overlay

Gentoo overlay for (mainly scientific) software that's not quite ready for the main tree
https://github.com/mschubert/overlay

bioinformatics ebuilds gentoo gentoo-overlay science

Last synced: about 12 hours ago
JSON representation

Gentoo overlay for (mainly scientific) software that's not quite ready for the main tree

• Host: GitHub
• URL: https://github.com/mschubert/overlay
• Owner: mschubert
• Created: 2018-02-08T18:57:24.000Z (almost 7 years ago)
• Default Branch: master
• Last Pushed: 2023-12-19T12:37:05.000Z (about 1 year ago)
• Last Synced: 2023-12-19T15:15:35.719Z (about 1 year ago)
• Topics: bioinformatics, ebuilds, gentoo, gentoo-overlay, science
• Language: Shell
• Homepage:
• Size: 286 KB
• Stars: 0
• Watchers: 2
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

Awesome Lists containing this project

README

        
Gentoo overlay

==============

![pkgcheck](https://github.com/mschubert/overlay/actions/workflows/pkgcheck.yml/badge.svg)

Gentoo overlay for software that's not quite ready for the main tree

Packages maintained in the [`science`](https://github.com/gentoo/sci) overlay

-----------------------------------------------------------------------------

[![bx-python](https://repology.org/badge/version-for-repo/gentoo_ovl_science/bx-python.svg?header=bx-python)](https://repology.org/project/bx-python/versions)

[![fastp](https://repology.org/badge/version-for-repo/gentoo_ovl_science/fastp.svg?header=fastp)](https://repology.org/project/fastp/versions)

[![gffutils](https://repology.org/badge/version-for-repo/gentoo_ovl_science/gffutils.svg?header=gffutils)](https://repology.org/project/gffutils/versions)

[![multiqc](https://repology.org/badge/version-for-repo/gentoo_ovl_science/multiqc.svg?header=multiqc)](https://repology.org/project/multiqc/versions)

[![python:colormath](https://repology.org/badge/version-for-repo/gentoo_ovl_science/python:colormath.svg?header=python:colormath)](https://repology.org/project/python:colormath/versions)

[![python:dpath](https://repology.org/badge/version-for-repo/gentoo_ovl_science/python:dpath.svg?header=python:dpath)](https://repology.org/project/python:dpath/versions)

[![python:lzstring](https://repology.org/badge/version-for-repo/gentoo_ovl_science/python:lzstring.svg?header=python:lzstring)](https://repology.org/project/python:lzstring/versions)

[![python:plac](https://repology.org/badge/version-for-repo/gentoo_ovl_science/python:plac.svg?header=python:plac)](https://repology.org/project/python:plac/versions)

[![python:pyaml-env](https://repology.org/badge/version-for-repo/gentoo_ovl_science/python:pyaml-env.svg?header=python:pyaml-env)](https://repology.org/project/python:pyaml-env/versions)

[![python:pybedtools](https://repology.org/badge/version-for-repo/gentoo_ovl_science/python:pybedtools.svg?header=python:pybedtools)](https://repology.org/project/python:pybedtools/versions)

[![python:pyfaidx](https://repology.org/badge/version-for-repo/gentoo_ovl_science/python:pyfaidx.svg?header=python:pyfaidx)](https://repology.org/project/python:pyfaidx/versions)

[![python:snakemake-interface-common](https://repology.org/badge/version-for-repo/gentoo_ovl_science/python:snakemake-interface-common.svg?header=python:snakemake-interface-common)](https://repology.org/project/python:snakemake-interface-common/versions)

[![python:snakemake-interface-executor-plugins](https://repology.org/badge/version-for-repo/gentoo_ovl_science/python:snakemake-interface-executor-plugins.svg?header=python:snakemake-interface-executor-plugins)](https://repology.org/project/python:snakemake-interface-executor-plugins/versions)

[![python:snakemake-interface-report-plugins](https://repology.org/badge/version-for-repo/gentoo_ovl_science/python:snakemake-interface-report-plugins.svg?header=python:snakemake-interface-report-plugins)](https://repology.org/project/python:snakemake-interface-report-plugins/versions)

[![python:snakemake-interface-storage-plugins](https://repology.org/badge/version-for-repo/gentoo_ovl_science/python:snakemake-interface-storage-plugins.svg?header=python:snakemake-interface-storage-plugins)](https://repology.org/project/python:snakemake-interface-storage-plugins/versions)

[![python:spectra](https://repology.org/badge/version-for-repo/gentoo_ovl_science/python:spectra.svg?header=python:spectra)](https://repology.org/project/python:spectra/versions)

[![python:rchitect](https://repology.org/badge/version-for-repo/gentoo_ovl_science/python:rchitect.svg?header=python:rchitect)](https://repology.org/project/python:rchitect/versions)

[![python:rich-click](https://repology.org/badge/version-for-repo/gentoo_ovl_science/python:rich-click.svg?header=python:rich-click)](https://repology.org/project/python:rich-click/versions)

[![python:yte](https://repology.org/badge/version-for-repo/gentoo_ovl_science/python:yte.svg?header=python:yte)](https://repology.org/project/python:yte/versions)

[![radian](https://repology.org/badge/version-for-repo/gentoo_ovl_science/radian.svg?header=radian)](https://repology.org/project/radian/versions)

[![rdkit](https://repology.org/badge/version-for-repo/gentoo_ovl_science/rdkit.svg?header=rdkit)](https://repology.org/project/rdkit/versions)

[![snakemake](https://repology.org/badge/version-for-repo/gentoo_ovl_science/python:snakemake.svg?header=snakemake)](https://repology.org/project/python:snakemake/versions)