https://github.com/msk-access/cwl_subworkflows

A list of subworkflows used for MSK-ACCESS data processing.
https://github.com/msk-access/cwl_subworkflows

common-workflow-language cwl-workflow workflow

Last synced: 4 months ago
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A list of subworkflows used for MSK-ACCESS data processing.

• Host: GitHub
• URL: https://github.com/msk-access/cwl_subworkflows
• Owner: msk-access
• License: agpl-3.0
• Created: 2019-08-15T00:07:32.000Z (almost 7 years ago)
• Default Branch: master
• Last Pushed: 2025-03-24T17:28:50.000Z (about 1 year ago)
• Last Synced: 2025-03-24T18:37:31.867Z (about 1 year ago)
• Topics: common-workflow-language, cwl-workflow, workflow
• Language: Common Workflow Language
• Homepage: https://msk-access.gitbook.io/cwl-subworkflows/
• Size: 942 KB
• Stars: 2
• Watchers: 9
• Forks: 1
• Open Issues: 1
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

          
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description: Central location for storing common workflow language based sub-workflows for building msk-access workflows

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# MSK-ACCESS sub-workflows

[![PyPI version](https://badge.fury.io/py/cwl_subworkflows.svg)](https://badge.fury.io/py/cwl_subworkflows)

[![Build Status](https://travis-ci.com/msk-access/cwl_subworkflows.svg?branch=master)](https://travis-ci.org/msk-access/cwl_subworkflows/)

[![Updates](https://pyup.io/repos/github/msk-access/cwl_subworkflows/shield.svg)](https://pyup.io/repos/github/msk-access/cwl_subworkflows/)

[![Python 3](https://pyup.io/repos/github/msk-access/cwl_subworkflows/python-3-shield.svg)](https://pyup.io/repos/github/msk-access/cwl_subworkflows/)

- Free software: Apache Software License 2.0

* Documentation: [https://msk-access.gitbook.io/cwl-subworkflows/](https://msk-access.gitbook.io/cwl-subworkflows/)

## Features

Create sub-workflows in common workflow language to generate msk-access parent workflow.

**Follow the README in repsective tool folder for execution of the tool.**

## Credits

- MSKCC - Members of Center for Molecular Oncology 

- MSKCC - Memebers of Department of Molecular Pathology

- Cookiecutter: https://github.com/audreyr/cookiecutter

- `audreyr/cookiecutter-pypackage`: https://github.com/audreyr/cookiecutter-pypackage