https://github.com/mskcc/cwl-commandlinetools

Central location for CWL CommandLineTools
https://github.com/mskcc/cwl-commandlinetools

Last synced: over 1 year ago
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Central location for CWL CommandLineTools

• Host: GitHub
• URL: https://github.com/mskcc/cwl-commandlinetools
• Owner: mskcc
• License: other
• Created: 2019-05-21T14:07:15.000Z (about 7 years ago)
• Default Branch: master
• Last Pushed: 2022-12-26T20:48:14.000Z (over 3 years ago)
• Last Synced: 2025-01-10T21:22:23.647Z (over 1 year ago)
• Language: Common Workflow Language
• Homepage:
• Size: 277 KB
• Stars: 3
• Watchers: 32
• Forks: 3
• Open Issues: 8
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

          
---

description: Central location for storing common workflow language based command line tools for building msk-access workflows

---

# MSK-ACCESS command-line tools

[![PyPI version](https://badge.fury.io/py/cwl-commandlinetools.svg)](https://badge.fury.io/py/cwl-commandlinetools)

[![Build Status](https://travis-ci.com/msk-access/cwl-commandlinetools.svg?branch=master)](https://travis-ci.org/msk-access/cwl-commandlinetools/)

[![Updates](https://pyup.io/repos/github/msk-access/cwl-commandlinetools/shield.svg)](https://pyup.io/repos/github/msk-access/cwl-commandlinetools/)

[![Python 3](https://pyup.io/repos/github/msk-access/cwl-commandlinetools/python-3-shield.svg)](https://pyup.io/repos/github/msk-access/cwl-commandlinetools/)

- Free software: Apache Software License 2.0

* Documentation: [https://msk-access.gitbook.io/command-line-tools-cwl/](https://msk-access.gitbook.io/command-line-tools-cwl/)

## Features

Create command line tools in common workflow language to generate msk-access workflows.

## Installation

Clone the repository:

```

git clone --depth 50 https://github.com/msk-access/cwl-commandlinetools.git

```

**Follow the README in respective tool folder for execution of the tool.**

## Credits

- CMO ACCESS Informatics Team

- This package was created with Cookiecutter_ and the `audreyr/cookiecutter-pypackage`_ project template.

  - Cookiecutter: https://github.com/audreyr/cookiecutter

  - `audreyr/cookiecutter-pypackage`: https://github.com/audreyr/cookiecutter-pypackage