https://github.com/mskcc/dmp-to-igo
https://github.com/mskcc/dmp-to-igo
Last synced: about 2 months ago
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- Host: GitHub
- URL: https://github.com/mskcc/dmp-to-igo
- Owner: mskcc
- Created: 2017-12-29T15:35:15.000Z (over 8 years ago)
- Default Branch: master
- Last Pushed: 2021-02-17T13:38:18.000Z (over 5 years ago)
- Last Synced: 2025-02-28T08:29:06.340Z (over 1 year ago)
- Language: Java
- Size: 160 KB
- Stars: 0
- Watchers: 9
- Forks: 0
- Open Issues: 0
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Metadata Files:
- Readme: README.md
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README
# dmp-to-igo
Service responsible for retrieving DMP samples from key.txt file exposed by DMP, converting them into IGO samples and storing into database via rest service https://github.com/mskcc/external-samples-rest.
Purpose: use already sequenced DMP samples together with IGO samples to process them together in pipeline. Eg. tumor from DMP and normal from IGO.
Architecture:
http://plvpipetrack1.mskcc.org:8099/display/LU/DMP+to+IGO+Architecture
Dependencies:
1. cmo-patient-converter: https://github.com/mskcc/cmo-patient-converter
2. external-samples-rest: https://github.com/mskcc/external-samples-rest
3. lims-rest: https://github.com/mskcc/PiExemplarRest
4. [DMP] dmpIds-for-patientId
5. [DMP] key.txt file
6. [DMP] bam_fs_locs.txt file