https://github.com/mskcc/dragen_util

Helper DRAGEN scripts
https://github.com/mskcc/dragen_util

Last synced: 9 months ago
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Helper DRAGEN scripts

• Host: GitHub
• URL: https://github.com/mskcc/dragen_util
• Owner: mskcc
• Created: 2021-10-22T19:26:14.000Z (over 4 years ago)
• Default Branch: main
• Last Pushed: 2021-10-28T19:11:21.000Z (over 4 years ago)
• Last Synced: 2025-02-28T08:28:36.376Z (over 1 year ago)
• Language: Shell
• Size: 33.2 KB
• Stars: 1
• Watchers: 6
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

          
# DRAGEN UTIL

Collection of dragen scripts used to run & analyze DRAGEN

## `bam_comparison`

Pairs BAM Reads by their QNAME & FLAG and then compares/graphs their MAPQ scores 

## `create_liftover_sam`

Creates liftover.sam file that can be used for DRAGEN alt-awareness

## `dragen_reference`

Scripts to create DRAGEN reference files

## `dragen_pipelines`

Scripts for DRAGEN pipelines

## `wes_project`

Template for creating WES BAMs w/ BQSR & DRAGEN

## `wgs_project`

Template for creating WGS/BQSR/CNV BAMs