https://github.com/mskcc/mjolnir-spec
Specification for the CI utility container
https://github.com/mskcc/mjolnir-spec
Last synced: 3 months ago
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Specification for the CI utility container
- Host: GitHub
- URL: https://github.com/mskcc/mjolnir-spec
- Owner: mskcc
- Created: 2023-11-14T18:58:32.000Z (over 2 years ago)
- Default Branch: main
- Last Pushed: 2024-02-26T19:41:38.000Z (over 2 years ago)
- Last Synced: 2025-01-10T21:22:00.555Z (over 1 year ago)
- Language: Dockerfile
- Size: 14.6 KB
- Stars: 0
- Watchers: 11
- Forks: 0
- Open Issues: 1
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Metadata Files:
- Readme: README.md
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README
# mjolnir-spec
Specification for the CI utility container
## Container Build Instructions
https://app.gitbook.com/o/-MMbSWFxDhC538nrKssf/s/-MMbS_59JoLaOrKG_T7F/deployment/building-production-containers-images
## Program/Application List:
Unless otherwise specified use latest convenient version
- Samtools
- htslib
- Bedtools
- R: version >= 4.2.x (can _not_ be 3.x)
- Python3: version >= 3.7
## R-libraries
- tidyverse
- readxl
- openxlsx
- devtools
- argparse
- Cairo
- docopt
- Hmisc
- jsonlite
- pals
- patchwork
- reticulate
- rlang
- rjson
- yaml
## Python3-libraries
- numpy
- scipy
- pandas