https://github.com/mskcc/triassic

Containers to faciliate the running of old (pre-disaster) JUNO scripts
https://github.com/mskcc/triassic

Last synced: about 1 month ago
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Containers to faciliate the running of old (pre-disaster) JUNO scripts

• Host: GitHub
• URL: https://github.com/mskcc/triassic
• Owner: mskcc
• Created: 2024-02-22T22:14:32.000Z (10 months ago)
• Default Branch: master
• Last Pushed: 2024-02-24T00:53:14.000Z (10 months ago)
• Last Synced: 2024-02-24T23:34:08.781Z (10 months ago)
• Language: Dockerfile
• Size: 2.93 KB
• Stars: 0
• Watchers: 3
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

        
# triassic

Containers to faciliate the running of old (pre-disaster) JUNO scripts

## Program/Application List:

Unless otherwise specified use latest convenient version

- Samtools 

- htslib

- Bedtools

- R: version >= 4.2.x (can _not_ be 3.x)

- Python3: version >= 3.7

## R-libraries

- tidyverse

- readxl

- openxlsx

- devtools

- argparse

- Cairo

- docopt

- Hmisc

- jsonlite

- pals

- patchwork

- reticulate

- rlang

- rjson

- yaml

## Python3-libraries

- numpy

- scipy

- pandas