https://github.com/mskcc/vcf2tsv

a tool that takes the output files of different callers and creates maf-like, row-based output
https://github.com/mskcc/vcf2tsv

Last synced: 4 months ago
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a tool that takes the output files of different callers and creates maf-like, row-based output

• Host: GitHub
• URL: https://github.com/mskcc/vcf2tsv
• Owner: mskcc
• Created: 2015-08-06T22:11:49.000Z (almost 11 years ago)
• Default Branch: master
• Last Pushed: 2015-08-19T15:36:58.000Z (almost 11 years ago)
• Last Synced: 2025-07-25T16:09:10.835Z (11 months ago)
• Language: Python
• Size: 145 KB
• Stars: 4
• Watchers: 83
• Forks: 4
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

          
# vcf2tsv

a tool that takes the output files of different callers and creates maf-like, row-based output. As of 7/6/15 it is used in

the bic pipeline, but will likely be obviated by vcf2maf.

It can handle the output from mutect, varscan, unified genotyper, haplotypecaller, somatic sniper and strelka. For mutect, it

produces a file that draws from both the vcf and out file.