https://github.com/mtvector/crandata
Crested-style Chromatin-adapted AnnData built on XArray
https://github.com/mtvector/crandata
Last synced: 10 months ago
JSON representation
Crested-style Chromatin-adapted AnnData built on XArray
- Host: GitHub
- URL: https://github.com/mtvector/crandata
- Owner: mtvector
- Created: 2025-03-08T18:16:49.000Z (11 months ago)
- Default Branch: main
- Last Pushed: 2025-03-24T18:34:53.000Z (10 months ago)
- Last Synced: 2025-03-24T19:37:18.279Z (10 months ago)
- Language: Jupyter Notebook
- Size: 287 KB
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
Awesome Lists containing this project
README
# CrAnData: Crested-style chromatin-adapted AnnData
Rebuilt CREsted's data handling to convert them to a lazy-loading AnnData-like datastructure on Xarray, backed by h5. Designed to generalize into multiple dimensions and allow for dataloading of other AnnData fields, like layers, obsm, etc.
Proof of concept works as a dataloader, but doesn't play nicely with crested's fit() currently.
See [this notebook](tests/test_crandataloader.ipynb) for examples on how to create and use the class.
There may or may not be further development of this class... (there will not, but check out __genomics_dataloading_repo__ soon)