https://github.com/multimeric/tidymultiqc
Converts 'MultiQC' Reports into Tidy Data Frames
https://github.com/multimeric/tidymultiqc
bioinformatics
Last synced: 9 months ago
JSON representation
Converts 'MultiQC' Reports into Tidy Data Frames
- Host: GitHub
- URL: https://github.com/multimeric/tidymultiqc
- Owner: multimeric
- License: gpl-3.0
- Created: 2021-03-25T06:35:49.000Z (about 5 years ago)
- Default Branch: master
- Last Pushed: 2024-04-01T11:39:33.000Z (almost 2 years ago)
- Last Synced: 2025-06-25T20:36:46.830Z (9 months ago)
- Topics: bioinformatics
- Language: R
- Homepage: https://multimeric.github.io/TidyMultiqc/
- Size: 1.52 MB
- Stars: 19
- Watchers: 2
- Forks: 5
- Open Issues: 5
-
Metadata Files:
- Readme: README.Rmd
- Changelog: NEWS.md
- License: LICENSE.md
Awesome Lists containing this project
README
---
output: github_document
---
```{r, include = FALSE}
knitr::opts_chunk$set(
collapse = TRUE,
comment = "#>",
fig.path = "man/figures/README-",
out.width = "100%"
)
multiqc_data_path = system.file("extdata", "wgs/multiqc_data.json", package = "TidyMultiqc")
```
# TidyMultiqc
TidyMultiqc Provides the means to convert 'multiqc_data.json' files, produced by the wonderful 'MultiQC' tool, into tidy data frames for downstream analysis in R.
**Please visit [the pkgdown website](https://multimeric.github.io/TidyMultiqc/index.html) for a comprehensive tutorial and function documentation.**
## Installation
The latest stable version can be installed from CRAN:
```r
install.packages("TidyMultiqc")
```
You can also install the development version of TidyMultiqc from [GitHub](https://github.com/) with:
``` r
# install.packages("devtools")
devtools::install_github("multimeric/TidyMultiqc")
```
## Example
```{r example}
TidyMultiqc::load_multiqc(multiqc_data_path)
```