https://github.com/mvinyard/anndataquery

Fetch and format data matrices from AnnData
https://github.com/mvinyard/anndataquery

anndata single-cell

Last synced: 3 months ago
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Fetch and format data matrices from AnnData

• Host: GitHub
• URL: https://github.com/mvinyard/anndataquery
• Owner: mvinyard
• License: mit
• Created: 2023-08-01T01:33:46.000Z (almost 2 years ago)
• Default Branch: main
• Last Pushed: 2024-01-19T13:44:28.000Z (over 1 year ago)
• Last Synced: 2025-02-25T19:47:32.210Z (3 months ago)
• Topics: anndata, single-cell
• Language: Jupyter Notebook
• Homepage: https://michael-vinyard.gitbook.io/anndataquery/
• Size: 444 KB
• Stars: 0
• Watchers: 1
• Forks: 0
• Open Issues: 2
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
# 🔎 AnnDataQuery

[![PyPI pyversions](https://img.shields.io/pypi/pyversions/adata_query.svg)](https://pypi.python.org/pypi/adata_query/)

[![PyPI version](https://badge.fury.io/py/adata_query.svg)](https://badge.fury.io/py/adata_query)

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Fetch data matrices from AnnData and format as `np.ndarray` or `torch.Tensor`, on any device.

## Installation

```python

pip install adata-query

```

## Get started

Example: [notebook](https://colab.research.google.com/github/mvinyard/AnnDataQuery/blob/main/notebooks/anndata_query_tutorial.ipynb)

For more information, see: [documentation](https://michael-vinyard.gitbook.io/anndataquery/)