https://github.com/mvinyard/annoyance

AnnData-compatible wrapper of Spotify's annoy library.
https://github.com/mvinyard/annoyance

anndata approximate-nearest-neighbor-search cell-type-classifier python single-cell

Last synced: 3 months ago
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AnnData-compatible wrapper of Spotify's annoy library.

• Host: GitHub
• URL: https://github.com/mvinyard/annoyance
• Owner: mvinyard
• License: mit
• Created: 2021-11-24T20:02:10.000Z (over 3 years ago)
• Default Branch: main
• Last Pushed: 2024-02-01T20:17:54.000Z (over 1 year ago)
• Last Synced: 2025-02-01T03:27:14.795Z (4 months ago)
• Topics: anndata, approximate-nearest-neighbor-search, cell-type-classifier, python, single-cell
• Language: Python
• Homepage:
• Size: 16.9 MB
• Stars: 1
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
# ![logo](/docs/images/annoyance.logo.svg)

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### [**annoy**](https://github.com/spotify/annoy) for the **an**notation of **ce**ll types. 

**Annoyance** is a simple API for classifying cell types as annotated in an **`adata.obs`** table. 

### Installation

```BASH

pip install annoyance

```

#### To install the development version

```BASH

git clone https://github.com/mvinyard/annoyance.git

cd ./annoyance/

pip install -e .

```

### Notes

This project uses open-source code from [**spotify/annoy**](https://github.com/spotify/annoy). However, **this repo is in no way affiliated with Spotify**. 

Interested? Questions and discussion may be directed to [**Michael Vinyard**](https://github.com/mvinyard) at: [[email protected]](mailto:[email protected]).