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https://github.com/n8n-code/n8n-nodes-monarchinitiative

API integration layer for linked biological objects
https://github.com/n8n-code/n8n-nodes-monarchinitiative

api automation monarchinitiative n8n n8n-community-node n8n-node openapi swagger workflow

Last synced: 6 days ago
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API integration layer for linked biological objects

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README 

          
# @n8n-dev/n8n-nodes-monarchinitiative



![monarchinitiative Banner](banner.svg)



[![npm version](https://img.shields.io/npm/v/@n8n-dev/n8n-nodes-monarchinitiative.svg)](https://www.npmjs.com/package/@n8n-dev/n8n-nodes-monarchinitiative)

[![License: MIT](https://img.shields.io/badge/License-MIT-yellow.svg)](https://opensource.org/licenses/MIT)



---



**Stop writing monarchinitiative API integrations by hand.**



Every time you connect n8n to monarchinitiative, you waste hours mapping endpoints, defining parameters, and debugging schemas. You copy-paste from docs, fix edge cases, and pray nothing breaks.



**What if connecting n8n to monarchinitiative took 5 minutes, not half a day?**



This node gives you **26+ resources** out of the box: **Bioentity**, **Association**, **Cam**, **Bioentityset**, **Bioentityset Homologs**, and 21 more: with full CRUD operations, typed parameters, and zero manual configuration.



---



## What You Get



- **Zero boilerplate**: Resources, operations, and fields are pre-configured and ready to use

- **Full CRUD**: Create, read, update, and delete support where the API allows it

- **Typed parameters**: No more guessing field types

- **Built-in auth**: API key authentication, ready to go

- **Declarative**: Native n8n performance, no custom execute() overhead



---



## Install



```bash

npm install @n8n-dev/n8n-nodes-monarchinitiative

```



**Or in n8n:**

1. **Settings → Community Nodes → Install**

2. Search: `@n8n-dev/n8n-nodes-monarchinitiative`

3. Click **Install**



---



## Quick Start



1. Install the node (above)

2. Add credentials: **monarchinitiative API** → paste your API key

3. Drag the **monarchinitiative** node into your workflow

4. Pick a resource → pick an operation → done.



That's it. No configuration files. No code. It just works.



---



## Resources



Bioentity (79 operations)



- Get Returns genes associated with a given anatomy

- Get Returns diseases associated with a case

- Get Returns genotypes associated with a case

- Get Returns models associated with a case

- Get Returns phenotypes associated with a case

- Get Returns variants associated with a case

- Get Returns cases associated with a disease

- Get Returns genes associated with a disease

- Get Returns genotypes associated with a disease

- Get Returns associations to models of the disease

- Get Returns pathways associated with a disease

- Get Returns phenotypes associated with disease

- Get Returns publications associated with a disease

- Get Returns substances associated with a disease

- Get Returns variants associated with a disease

- Get Returns annotations associated to a function term

- Get Returns genes associated to a GO term

- Get Returns publications associated to a GO term

- Get Returns taxons associated to a GO term

- Get Returns anatomical entities associated with a gene

- Get Returns cases associated with a gene

- Get Returns diseases associated with gene

- Get Returns expression events for a gene

- Get Returns function associations for a gene

- Get Returns genotypes associated with a gene

- Get Returns homologs for a gene

- Get Returns interactions for a gene

- Get Returns models associated with a gene

- Get Return diseases associated with orthologs of a gene

- Get Return phenotypes associated with orthologs for a gene

- Get Returns pathways associated with gene

- Get Returns phenotypes associated with gene

- Get Returns publications associated with a gene

- Get Returns variants associated with a gene

- Get Returns cases associated with a genotype

- Get Returns diseases associated with a genotype

- Get Returns genes associated with a genotype

- Get Returns genotypes genotype associations

- Get Returns models associated with a genotype

- Get Returns phenotypes associated with a genotype

- Get Returns publications associated with a genotype

- Get Returns genotypes variant associations

- Get Returns cases associated with a model

- Get Returns diseases associated with a model

- Get Returns genes associated with a model

- Get Returns genotypes associated with a model

- Get Returns phenotypes associated with a model

- Get Returns publications associated with a model

- Get Returns variants associated with a model

- Get Returns diseases associated with a pathway

- Get Returns genes associated with a pathway

- Get Returns phenotypes associated with a pathway

- Get Returns anatomical entities associated with a phenotype

- Get Returns cases associated with a phenotype

- Get Returns diseases associated with a phenotype

- Get Returns genes associated with a phenotype

- Get Returns genotypes associated with a phenotype

- Get Returns pathways associated with a phenotype

- Get Returns publications associated with a phenotype

- Get Returns variants associated with a phenotype

- Get Returns diseases associated with a publication

- Get Returns genes associated with a publication

- Get Returns genotypes associated with a publication

- Get Returns models associated with a publication

- Get Returns phenotypes associated with a publication

- Get Returns variants associated with a publication

- Get Returns associations between an activity and process and the specified substance

- Get Returns associations between given drug and roles

- Get Returns substances associated with a disease

- Get Returns cases associated with a variant

- Get Returns diseases associated with a variant

- Get Returns genes associated with a variant

- Get Returns genotypes associated with a variant

- Get Returns models associated with a variant

- Get Returns phenotypes associated with a variant

- Get Returns publications associated with a variant

- Get Returns basic info on object of any type

- Get Returns associations for an entity regardless of the type

- Get Return basic info on an object for a given type



Association (7 operations)



- Get Returns associations connecting two entities

- Get Returns list of matching associations for a given subject category

- Get Returns list of matching associations between a given subject and object category

- Get Returns list of matching associations starting from a given subject source

- Get Returns list of matching associations pointing to a given object target

- Get Returns list of matching associations of a given type

- Get Returns the association with a given identifier



Cam (10 operations)



- Get Returns list of models

- Get Returns list of matches

- Get Returns list of all instances

- Get Returns list of ALL models

- Get Returns list of all contributors across all models

- Get Returns list of all properties used across all models

- Get Returns list property values for all models

- Get Returns list of models matching query

- Get Returns a complete model

- Get Returns list of models



Bioentityset (4 operations)



- Get Returns compact associations for a given input set

- Get Summary statistics for objects associated

- Get TODO Graph object spanning all entities

- Get Summary statistics for objects associated



Bioentityset Homologs (1 operations)



- Get Returns homology associations for a given input set of genes



Bioentityset Slimmer (3 operations)



- Get For a given gene s summarize its annotations over a defined set of slim

- Get For a given gene s summarize its annotations over a defined set of slim

- Get For a given gene s summarize its annotations over a defined set of slim



Evidence Graph (2 operations)



- Get Returns evidence graph object for a given association

- Get Returns evidence as a association results object given an association



Genome Features (1 operations)



- Get Returns list of matches



Graph (2 operations)



- Get Returns edges emanating from a given node

- Get Returns a graph node



Identifier Mapper (1 operations)



- Get TODO maps a list of identifiers from a source to a target



Identifier Prefixes (3 operations)



- Get Returns list of prefixes

- Get Returns contracted URI

- Get Returns expanded URI



Mart (5 operations)



- Get Bulk download of case associations

- Get Bulk download of disease associations

- Get Bulk download of gene associations

- Get Bulk download of orthologs

- Get Bulk download of paralogs



Nlp Annotate (4 operations)



- Get Annotate a given text using SciGraph annotator

- Post Annotate a given text using SciGraph annotator

- Get Annotate a given content using SciGraph annotator and get all entities from content

- Post Annotate a given content using SciGraph annotator and get all entities from content



Ontol (3 operations)



- Get Returns information content IC for a set of relevant ontology classes

- Get Extract a subgraph from an ontology

- Post Extract a subgraph from an ontology



Ontol Labeler (1 operations)



- Get Fetches a map from CURIEs IDs to labels



Ontol Identifier (2 operations)



- Get Fetches a map from CURIEs IDs to labels

- Post Fetches a map from CURIEs IDs to labels



Ontology (6 operations)



- Get Returns the ancestor ontology terms shared by two ontology terms

- Get Returns meta data of an ontology subset slim

- Get Returns meta data of an ontology term

- Get Returns graph of an ontology term

- Get Extract a subgraph from an ontology term

- Get Returns subsets slims associated to an ontology term



Owl Ontology (2 operations)



- Get Placeholder use OWLery for now

- Get Placeholder use direct SPARQL endpoint for now



Pair Sim (1 operations)



- Get pairwise similarity



Individual (2 operations)



- Get Returns list of matches

- Get Returns list of matches



Relation Usage (4 operations)



- Get All relations used plus count of associations

- Get All relations used plus count of associations

- Get Relation usage count for all subj x obj category combinations

- Get Relation usage count for all subj x obj category combinations showing label



Search (3 operations)



- Get Returns list of matching concepts or entities using lexical search

- Get Returns list of matching concepts or entities using lexical search

- Get Returns list of matching concepts or entities using lexical search



Variation Set (7 operations)



- Get Returns list of variant sets

- Post Creates a new variant set

- Get Returns list of matches

- Get Returns list of variant sets from a specified time period

- Delete s variant set

- Get Returns a variant set

- Put Updates a variant set



Sim (5 operations)



- Get Compare a reference profile vs one profiles

- Post Compare a reference profile vs one or more profiles

- Get annotation score

- Post Get annotation score

- Get Search for phenotypically similar diseases or model genes



Mme (5 operations)



- Post Match a patient to diseases based on their phenotypes

- Post Match a patient to fruit fly genes based on similar phenotypes

- Post Match a patient to mouse genes based on similar phenotypes

- Post Match a patient to nematode genes based on similar phenotypes

- Post Match a patient to zebrafish genes based on similar phenotypes



Metadata (1 operations)



- Get metadata for all datasets from SciGraph



---



## Why This Node?



**Without this node:**

- Hours of manual API integration

- Copy-pasting from monarchinitiative docs

- Debugging auth, pagination, error handling

- Maintaining your own client code



**With this node:**

- Install → configure → use. 5 minutes.

- Auto-generated from the official monarchinitiative OpenAPI spec

- Always up to date when the API changes

- Native n8n performance



---



## Auto-Generated

This node was auto-generated from the official **monarchinitiative** OpenAPI specification using

[@n8n-dev/n8n-openapi-node-ultimate](https://github.com/kelvinzer0/n8n-openapi-node-ultimate),

then validated against the live API so you get accurate types and real parameters, not guesswork.



When the monarchinitiative API updates, this node updates too.



---



## License



MIT © [kelvinzer0](https://github.com/n8n-code)