https://github.com/nanoporetech/marine-phage-paper-scripts

https://github.com/nanoporetech/marine-phage-paper-scripts

Last synced: over 1 year ago
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• Host: GitHub
• URL: https://github.com/nanoporetech/marine-phage-paper-scripts
• Owner: nanoporetech
• License: mpl-2.0
• Created: 2019-04-18T13:42:37.000Z (over 7 years ago)
• Default Branch: master
• Last Pushed: 2019-10-03T19:52:40.000Z (almost 7 years ago)
• Last Synced: 2025-04-06T08:02:14.896Z (over 1 year ago)
• Language: Python
• Size: 32.2 KB
• Stars: 6
• Watchers: 22
• Forks: 3
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

          
This repository contains additional analysis scripts used in the paper: Beaulaurier et al.: *Assembly-free single-molecule nanopore sequencing recovers complete virus genomes from natural microbial communities*.

### Dependencies

* python>=3.6

* biopython>=1.68

* pandas>=0.22

* tqdm>=4.23.3

* matplotlib>=3.0.0

* numpy>=1.15

* scipy>=1.1.0

* scikit-learn>=0.19.1

* hdbscan>=0.8.20

* umap-learn>=0.3.8

* mummer==3.23

All dependencies are available via conda.