https://github.com/nanxstats/pycsr
Python for Clinical Study Reports and Submission
https://github.com/nanxstats/pycsr
clinical-trials ectd pharmaverse python regulatory reporting rtf
Last synced: 4 months ago
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Python for Clinical Study Reports and Submission
- Host: GitHub
- URL: https://github.com/nanxstats/pycsr
- Owner: nanxstats
- Created: 2024-07-19T18:10:50.000Z (almost 2 years ago)
- Default Branch: main
- Last Pushed: 2025-11-26T18:13:45.000Z (7 months ago)
- Last Synced: 2025-11-29T14:53:11.877Z (7 months ago)
- Topics: clinical-trials, ectd, pharmaverse, python, regulatory, reporting, rtf
- Language: HTML
- Homepage: https://pycsr.org/
- Size: 20.1 MB
- Stars: 9
- Watchers: 1
- Forks: 3
- Open Issues: 1
-
Metadata Files:
- Readme: README.md
- Agents: AGENTS.md
Awesome Lists containing this project
README
# Python for Clinical Study Reports and Submission
The book is available at .
This project is a work in progress, enriched by the community's collective efforts.
As you read this book, consider joining us as a contributor.
The quality of this resource relies heavily on your input and expertise.
We value your participation and contribution.
- Authors: contributed the majority of content to at least one chapter.
- Contributors: contributed at least one commit to the source code.
- [List of authors and contributors](https://pycsr.org/preface.html#authors-and-contributors)
## Quick start
To explore code in this book, use the "Open in GitHub Codespaces" button below.
[](https://codespaces.new/nanxstats/pycsr?quickstart=1&devcontainer_path=.devcontainer%2Fdevcontainer.json)
## Build the book
Restore and activate the virtual environment using `uv`:
```bash
uv sync
source .venv/bin/activate
```
Render all formats:
```bash
quarto render
```
Render HTML only:
```bash
quarto render --to html
```
Render slides:
```bash
quarto render slides/rinpharma2025/index.qmd
```
## Maintenance
Update Python version:
```bash
uv python pin x.y.z
uv sync
```
Update dependencies:
```bash
uv lock --upgrade
uv sync
```