https://github.com/nathakits/streamlit-sars-cov2

SARS-CoV-2 analysis using BioPython
https://github.com/nathakits/streamlit-sars-cov2

biopython covid-19 dna mrna streamlit

Last synced: 26 days ago
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SARS-CoV-2 analysis using BioPython

• Host: GitHub
• URL: https://github.com/nathakits/streamlit-sars-cov2
• Owner: nathakits
• License: mit
• Created: 2021-01-26T14:11:02.000Z (about 4 years ago)
• Default Branch: main
• Last Pushed: 2021-05-28T13:57:07.000Z (over 3 years ago)
• Last Synced: 2024-11-15T12:36:48.563Z (3 months ago)
• Topics: biopython, covid-19, dna, mrna, streamlit
• Language: Python
• Homepage: https://share.streamlit.io/nathakits/streamlit-sars-cov2/main/covid19.py
• Size: 34.2 KB
• Stars: 1
• Watchers: 2
• Forks: 0
• Open Issues: 1
• Metadata Files:
  • Readme: README.md
  • Funding: .github/FUNDING.yml
  • License: LICENSE

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README

        
# SARS-CoV-2 analysis with BioPython and Streamlit

## Introduction

Analyze SARS-CoV-2 genome from Thailand and China.

- Nucleotide frequency

- Transcription (DNA -> mRNA)

- Translation (mRNA -> Amino acids)

- Compare DNA with pairwise2

## Build locally

Instill Anaconda if you haven't already.

Set up and activate development environment:

```bash

conda env update --file environment.yml --name pyviz

conda activate pyviz

```

Run web app

```bash

streamlit run covid19.py

```

Test Streamlit

```bash

streamlit hello

```