https://github.com/naturale0/dme2_beta_fixed

Fixed version of DME2_2008_05_26 by smithlabcode
https://github.com/naturale0/dme2_beta_fixed

Last synced: 6 days ago
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Fixed version of DME2_2008_05_26 by smithlabcode

• Host: GitHub
• URL: https://github.com/naturale0/dme2_beta_fixed
• Owner: naturale0
• Created: 2017-01-09T05:45:18.000Z (almost 8 years ago)
• Default Branch: master
• Last Pushed: 2017-01-10T07:03:32.000Z (almost 8 years ago)
• Last Synced: 2024-11-08T03:44:09.321Z (about 2 months ago)
• Language: C++
• Homepage:
• Size: 161 KB
• Stars: 0
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

        
# DME2: installation-error-fixed version

This is a fixed version DME2(The Discriminating Matrix Enumerator) algorithm for *de novo* DNA/RNA motif searching.

Original source code is available [here](http://smithlabresearch.org/software/dme/), or [here](https://github.com/smithlabcode/dme).

I tried to install it, but both of the sources returned many errors when trying to compile and install them.

I just edited the source code a little to make it **actually INSTALLABLE**.  

Note that I did not add, delete or modify any process of motif searching.

Tested on Ubuntu 10.04.4 at 2017/01/09.

## Requirements

Just like the original program, it requires `popt` library.

## Installation

```

$ git clone https://github.com/Sihyung-Park/DME2_beta_fixed

$ cd DME2_beta_fixed

$ make && make install

```

`$` is a command line prompt.

You might have to `sudo make install` instead of `make install`.

## Use

Follow `README_DME2` file of the original program.

## License

Just like the original program, it follows GNU GPL.