https://github.com/naturalis/arise-metabarcoding-biodiversity

ARISE metabarcoding
https://github.com/naturalis/arise-metabarcoding-biodiversity

arise hpc metabarcoding r

Last synced: about 2 months ago
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ARISE metabarcoding

• Host: GitHub
• URL: https://github.com/naturalis/arise-metabarcoding-biodiversity
• Owner: naturalis
• License: mit
• Created: 2022-09-07T13:21:22.000Z (over 3 years ago)
• Default Branch: main
• Last Pushed: 2023-11-28T09:22:17.000Z (over 2 years ago)
• Last Synced: 2025-09-05T02:44:40.666Z (9 months ago)
• Topics: arise, hpc, metabarcoding, r
• Language: R
• Homepage: https://naturalis.github.io/arise-metabarcoding-biodiversity/
• Size: 34.8 MB
• Stars: 0
• Watchers: 9
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE.md
  • Citation: CITATION.cff

Awesome Lists containing this project

README

          
# Analyzing Illumina NovaSeq data using dada2

This repository contains code and documentation for performing dada2 analyses

on Illumina NovaSeq data on Naturalis's high-performance computing 

infrastructure. The repository is laid out following the guidelines of 

[Noble, 2009](https://doi.org/10.1371/journal.pcbi.1000424). The contents are

made available under an [MIT open source license](LICENSE.md). The following

subsections are here:

- [Documentation](doc) about configuring the infrastructure, adding users,

  installing software, and staging the code in this repository.

- [Source code](src) with additional scripts for the pipeline.

- [Intermediate and result data](data)

- [Resulting plots and outputs](results)