https://github.com/nbisweden/mrbayes

MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentation and downloading the program, please see the home page:
https://github.com/nbisweden/mrbayes

bayesian-inference bioinformatics markov-chain-monte-carlo phylogenetics research-tool

Last synced: 10 days ago
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MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentation and downloading the program, please see the home page:

• Host: GitHub
• URL: https://github.com/nbisweden/mrbayes
• Owner: NBISweden
• License: gpl-3.0
• Created: 2016-04-06T11:59:34.000Z (about 9 years ago)
• Default Branch: develop
• Last Pushed: 2025-02-13T08:24:16.000Z (2 months ago)
• Last Synced: 2025-04-03T05:09:23.320Z (19 days ago)
• Topics: bayesian-inference, bioinformatics, markov-chain-monte-carlo, phylogenetics, research-tool
• Language: C
• Homepage: http://NBISweden.github.io/MrBayes/
• Size: 43.6 MB
• Stars: 240
• Watchers: 47
• Forks: 82
• Open Issues: 72
• Metadata Files:
  • Readme: README
  • Changelog: NEWS
  • License: COPYING

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README

        
Hi,

This is the GitHub repository for MrBayes, a program used for Bayesian

inference of phylogeny.

Build instructions, very very short version (would install MrBayes as

"/usr/local/bin/mb" on a Unix system):

    git clone --depth=1 https://github.com/NBISweden/MrBayes.git

    cd MrBayes

    ./configure

    make && sudo make install

    Refer to the document called "INSTALL" for further information.

Current repository directory layout:

    .

    ├── autotools      : Files relating to the build system

    ├── doc

    │   └── manual     : The manual

    ├── examples       : Example input data sets

    └── src            : C source code

The MrBayes web site is available at

    http://mrbayes.net/

Historical releases are tagged with "v3.2.0" (etc.) from release 3.2.0

onwards.

The 'master' branch contains releases.

The 'develop' branch should hopefully, at all times, contain working

development code that at least compiles.  Apart from simple fixes, new

development happens on feature branches off the 'develop' branch, and

are merged back into 'develop' when finished.  This more or less follows

the "git-flow" branching model.

The 'gh-pages' branch contains the web site (only).

The 'testing' branch contains testing data files (only).

After release 3.2.6 (November 2015), MrBayes entered "maintenance mode",

and its care has been passed over to NBIS (National Bioinformatics

Infrastructure Sweden, http://nbis.se/).  The original development

team is still involved with the program, but any future releases will

probably be geared more towards bug-fixes rather than addition of new

features.

With kind regards,

    Andreas (Kusalananda) Kähäri, and

    Johan Nylander

    NBIS