https://github.com/nceas/2016-postdoc-training
Computational and collaboration skills for integrative conservation science workshop
https://github.com/nceas/2016-postdoc-training
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Computational and collaboration skills for integrative conservation science workshop
- Host: GitHub
- URL: https://github.com/nceas/2016-postdoc-training
- Owner: NCEAS
- Created: 2017-03-17T17:34:38.000Z (about 8 years ago)
- Default Branch: master
- Last Pushed: 2017-03-21T23:51:18.000Z (about 8 years ago)
- Last Synced: 2025-01-10T19:47:22.212Z (5 months ago)
- Language: HTML
- Size: 113 MB
- Stars: 3
- Watchers: 4
- Forks: 1
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
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README
Computational & collaboration skills for integrative conservation science workshop
=====
This intensive 4-day workshop on *Computational and Collaboration Skills for Integrative Conservation Science* held at NCEAS from June 27th to 30th aims to help participants to:
* Integrate collaborative science best practices within SNAPP Working Groups
* Empower participants to adopt computing best practices in their scientific workflows and data management
* Create a greater sense of SNAPP community identity among the postdocs
* Foster potential collaboration and enhanced knowledge-sharing across SNAPP Working Groups
* Familiarize and instruct researchers in the use of NCEAS (and other) cyberinfrastructures and services
* Clarify and reinforce commitment to open science
## Agenda shared
## Modules status
order | Module Name | Lesson | Preparation Status
------ | ----------- | -------- | ------------------
00 | [Introduction](00-introduction/) | presentations
01 | [Command line](01-command-line/) | [command-line](01-command-line/1-command-line.md) | Adapated | Need to add command examples
01 | [Command line](01-command-line/) | [vim](01-command-line/2-vim.md) | Adapted
01 | [Command line](01-command-line/) | [bash loops](01-command-line/3-bash-loops.md) | Ready
01 | [Command line](01-command-line/) | [regular expression](01-command-line/4-regular-expressions.md) | Adapted
02 | [Working remote](02-working-remote/) | [servers and networks](02-working-remote/1-servers-and-networks.md) | Adapted
02 | [Working remote](02-working-remote/) | [ssh](02-working-remote/2-ssh-tmux.md) | Adapted
02 | [Working remote](02-working-remote/) | [alternative ways to connect to Aurora](02-working-remote/3-working-remote-alternatives.md) | Created
03 | [Collaborative Science](03-collaborative-science/) | [Collaborative Tools](03-collaborative-science/1-virtual-collaboration.md) | Adapted information from OSS
04 | [Introduction to R](04-Intro-R/) | [R basics](04-Intro-R/1-R-basics.Rmd) | Created 04 | [Introduction to R](04-Intro-R/) | [flow control (loops, conditions, ..)](04-Intro-R/2-R-control.Rmd) | Created
04 | [Introduction to R](04-Intro-R/) | [getting help](04-Intro-R/3-rhelp.md) | Gathered from OSS
04 | [Introduction to R](04-Intro-R/) | [RStudio](04-Intro-R/5-RStudio.md) | Created
05 | [Code Versioning](05-code-versioning/) | [git basics](05-code-versioning/1-code_versioning_basics.md) | Created |
05 | [Code Versioning](05-code-versioning/) | [git remote](05-code-versioning/2-code-versioning-remote.md) | Created |
05 | [Code Versioning](05-code-versioning/) | [GitHub](05-code-versioning/3-GitHub.md) | Created
05 | [Code Versioning](05-code-versioning/) | [using git from RStudio](05-code-versioning/4-getting-started-with-git-in-RStudio.md) | Created |
06 | [Code best Practices](06-code-best-practices/) | [Code best practices and scoping](1-coding-best-practices-general-tips.md) | Created
07 | [Introduction to Python](07-intro-Python/) | [quick dive into Python](07-intro_Python/1-quick-dive-into-python.md) | Adapted from OSS
07 | [Introduction to Python](07-intro-Python/) | [R vs Python](07-intro_Python/2-rvspython.md) | Adapted from OSS |
08 | [Advanced R]() | [Data Wrangling (dplyr & tidyr)](08-advanced-R/1-data-wrangling.Rmd) | Created |
09 | [Using multiple cores](09-multicore-processing/) | [multicore processing](09-multicore-processing/1-multiprocessing-tools.md) | Created |
09 | [Intro to geospatial](10-intro-geospatial/) | [GIS concepts](10-intro-geospatial/1-intro-geospatial.md)| Adapted |
09 | [Intro to geospatial](10-intro-geospatial/) | [QGIS](10-intro-geospatial/2-qgis.md) | Adapted |
09 | [Intro to geospatial](10-intro-geospatial/) | [Processing rasters on Aurora with R](10-intro-geospatial/3-tips-Rraster-on-Aurora.md) | Created | Already obselete
09 | [Intro to geospatial](10-intro-geospatial/) | [R raster](https://github.nceas.ucsb.edu/Training/2016-postdoc-training/blob/master/10-intro-geospatial/4-r-spatial-example.R) | Gathered from OSS - not used |
09 | [Intro to geospatial](10-intro-geospatial/) | [PostGIS](https://github.nceas.ucsb.edu/Training/2016-postdoc-training/blob/master/10-intro-geospatial/5-postgis_example.txt) | Gathered from OSS - not used |
10 | [Open Science](11-open-science/) | intro to KNB | Live demo by Lauren Palmer |
11 | Data Modeling and Semantics | Presentations from Mark|
12 | Data visualization | Sam did a demo of her shiny app |
## License
National Center for Ecological Analysis and Synthesis, NCEAS, UCSB
Copyright (c) 2016, the Regents of the University of California
This work is licensed under a Creative Commons Attribution-NonCommercial 4.0 International License.