https://github.com/nchenche/cusprose

Customizable Protein Search package
https://github.com/nchenche/cusprose

Last synced: 27 days ago
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Customizable Protein Search package

• Host: GitHub
• URL: https://github.com/nchenche/cusprose
• Owner: nchenche
• Created: 2020-10-28T11:02:35.000Z (about 4 years ago)
• Default Branch: master
• Last Pushed: 2021-05-10T13:27:59.000Z (over 3 years ago)
• Last Synced: 2023-10-20T09:24:33.058Z (about 1 year ago)
• Language: HTML
• Size: 20.8 MB
• Stars: 0
• Watchers: 2
• Forks: 0
• Open Issues: 14
• Metadata Files:
  • Readme: README.md

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README

        
# Welcome to CustomProteinSearch

    

## Description



CustomProteinSearch is a python package containing two independent but complementary programs whose overall objective is to help users to search for specific proteins of interest based on their domain composition: IterHMMBuildand ProSeCDA.








IterHMMBuild is an iterative search method based on the hmmer program, the aim of which is to provide users with a representative HMM protein profile of interest constructed by an iterative enrichment process starting from a small initial set of related protein sequences.





ProSeCDA is a tool that allows to search in a given protein database multiple proteins of interest defined by a user-specified set of domains.



## Documentation and installation

Please see our [documentation](https://nchenche.github.io/cusProSe/) for details about the package and how to [install](https://nchenche.github.io/cusProSe/installation.html) it.

Note: CusProSE is actually not supported on Windows, we'll fix this later.