https://github.com/nci-gdc/fastq_cleaner

FASTQ Vendor Failed Reads Removal
https://github.com/nci-gdc/fastq_cleaner

bioinformatics docker workflow-tool

Last synced: about 2 months ago
JSON representation

FASTQ Vendor Failed Reads Removal

• Host: GitHub
• URL: https://github.com/nci-gdc/fastq_cleaner
• Owner: NCI-GDC
• License: apache-2.0
• Created: 2018-07-05T23:56:22.000Z (almost 8 years ago)
• Default Branch: master
• Last Pushed: 2025-04-29T23:39:09.000Z (about 1 year ago)
• Last Synced: 2025-05-25T14:46:22.658Z (about 1 year ago)
• Topics: bioinformatics, docker, workflow-tool
• Language: C++
• Homepage:
• Size: 72.3 KB
• Stars: 0
• Watchers: 8
• Forks: 0
• Open Issues: 2
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

Awesome Lists containing this project

README

          
# fastq_cleaner

A multi-threaded (~180% cpu for compressed files when pairs are input) tool to remove filtered fastq reads.

The tool looks for filtered reads in either read of a pair, and will then remove both reads of the pair.

Memory usage is tunable. Approximately 250M RAM per 100,000 read pairs.

cwl included.