https://github.com/nci-gdc/gdc-rnaseq-tool

Utility scripts for RNA-seq workflows
https://github.com/nci-gdc/gdc-rnaseq-tool

bioinformatics docker workflow-tool

Last synced: 4 months ago
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Utility scripts for RNA-seq workflows

• Host: GitHub
• URL: https://github.com/nci-gdc/gdc-rnaseq-tool
• Owner: NCI-GDC
• License: apache-2.0
• Created: 2018-05-29T19:30:08.000Z (about 8 years ago)
• Default Branch: main
• Last Pushed: 2025-02-05T22:38:02.000Z (over 1 year ago)
• Last Synced: 2025-02-05T23:19:18.883Z (over 1 year ago)
• Topics: bioinformatics, docker, workflow-tool
• Language: Python
• Size: 92.8 KB
• Stars: 1
• Watchers: 11
• Forks: 1
• Open Issues: 3
• Metadata Files:
  • Readme: README.md
  • Contributing: CONTRIBUTING.md
  • License: LICENSE

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README

          
# gdc-rnaseq-tool

Utility scripts for GDC RNA-seq workflows. The docker file also installs Trimmomatic and fqvendorfail.

## Installation

```sh

pip install .

```

## Development

* Clone this repository

* Requirements:

  * Python >= 3.8

  * Tox

* `make venv` to create a virtualenv

* `source .venv/bin/activate` to activate new virtualenv

* `make init` to install dependencies and pre-commit hooks