https://github.com/nci-gdc/gdc-tosvc-tools

Tools for GDC Tumor-only Somatic Variant Calling Workflow
https://github.com/nci-gdc/gdc-tosvc-tools

bioinformatics docker workflow-tool

Last synced: 2 months ago
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Tools for GDC Tumor-only Somatic Variant Calling Workflow

• Host: GitHub
• URL: https://github.com/nci-gdc/gdc-tosvc-tools
• Owner: NCI-GDC
• License: apache-2.0
• Created: 2018-07-03T00:21:56.000Z (almost 8 years ago)
• Default Branch: main
• Last Pushed: 2024-03-30T02:12:34.000Z (about 2 years ago)
• Last Synced: 2025-07-10T05:16:56.231Z (11 months ago)
• Topics: bioinformatics, docker, workflow-tool
• Language: Python
• Homepage:
• Size: 59.6 KB
• Stars: 0
• Watchers: 9
• Forks: 1
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

          
# gdc-tosvc-tools

Tools for GDC Tumor-only Somatic Variant Calling Workflow

## Installation

```sh

pip install .

```

## Development

* Clone this repository

* Requirements:

  * Python >= 3.8

  * Tox

* `make venv` to create a virtualenv

* `source .venv/bin/activate` to activate new virtualenv

* `make init` to install dependencies and pre-commit hooks