https://github.com/nci-gdc/samtools-metrics-sqlite

https://github.com/nci-gdc/samtools-metrics-sqlite

bioinformatics docker workflow-tool

Last synced: about 2 months ago
JSON representation

• Host: GitHub
• URL: https://github.com/nci-gdc/samtools-metrics-sqlite
• Owner: NCI-GDC
• License: apache-2.0
• Created: 2016-07-22T21:46:07.000Z (almost 10 years ago)
• Default Branch: main
• Last Pushed: 2025-03-18T23:25:06.000Z (over 1 year ago)
• Last Synced: 2025-04-08T22:47:44.899Z (about 1 year ago)
• Topics: bioinformatics, docker, workflow-tool
• Language: Python
• Size: 43.9 KB
• Stars: 0
• Watchers: 7
• Forks: 1
• Open Issues: 3
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

          
# samtools-metrics-sqlite

samtools-metrics-sqlite

## Installation

```sh

pip install .

```

## Development

* Clone this repository

* Requirements:

  * Python >= 3.9

  * Tox

* `make venv` to create a virtualenv

* `source .venv/bin/activate` to activate new virtualenv

* `make init` to install dependencies and pre-commit hooks