https://github.com/nci-gdc/varscan-tool

GDC VarScan2 docker
https://github.com/nci-gdc/varscan-tool

bioinformatics docker workflow-tool

Last synced: about 2 months ago
JSON representation

GDC VarScan2 docker

• Host: GitHub
• URL: https://github.com/nci-gdc/varscan-tool
• Owner: NCI-GDC
• License: apache-2.0
• Created: 2016-01-07T00:16:32.000Z (over 10 years ago)
• Default Branch: master
• Last Pushed: 2022-12-08T11:49:33.000Z (over 3 years ago)
• Last Synced: 2025-01-01T01:37:18.610Z (over 1 year ago)
• Topics: bioinformatics, docker, workflow-tool
• Language: Python
• Homepage:
• Size: 84 KB
• Stars: 1
• Watchers: 11
• Forks: 1
• Open Issues: 1
• Metadata Files:
  • Readme: README.md
  • Contributing: CONTRIBUTING.md
  • License: LICENSE

Awesome Lists containing this project

README

          
# varscan-tool

VarScan is a platform-independent mutation caller for targeted, exome, and whole-genome resequencing data generated on Illumina, SOLiD, Life/PGM, Roche/454, and similar instruments.

## Installation

```sh

pip install .

```

## Development

* Clone this repository

* Requirements:

  * Python >= 3.9

  * Tox

* `make venv` to create a virtualenv

* `source .venv/bin/activate` to activate new virtualenv

* `make init` to install dependencies and pre-commit hooks