https://github.com/neonwatty/pypmed

A Python interface for PubMed's APIs
https://github.com/neonwatty/pypmed

api publications pubmed python research-tool

Last synced: 3 months ago
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A Python interface for PubMed's APIs

• Host: GitHub
• URL: https://github.com/neonwatty/pypmed
• Owner: neonwatty
• License: mit
• Created: 2023-04-25T22:13:05.000Z (over 2 years ago)
• Default Branch: main
• Last Pushed: 2023-04-27T03:44:49.000Z (over 2 years ago)
• Last Synced: 2025-07-13T09:49:04.352Z (3 months ago)
• Topics: api, publications, pubmed, python, research-tool
• Language: Jupyter Notebook
• Homepage:
• Size: 81.1 KB
• Stars: 5
• Watchers: 2
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

          
[![Python application](https://github.com/jermwatt/pypmed/actions/workflows/python-app.yml/badge.svg)](https://github.com/jermwatt/pypmed/actions/workflows/python-app.yml)

# pypmed - a simple Python interface for [PubMed's API](https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi/)

pypmed is a Python library that provides easy access to the [PubMed's APIs](https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi/).

## Installation

`pip install pypmed`

## Example usage

This example can be executed in [this example notebook](https://colab.research.google.com/github/jermwatt/pypmed/blob/main/pypmed_example_usage.ipynb#scrollTo=8TBhToBJo8ZY).

```python

from pypmed import apis 

search_criteria = {'author_first_name': 'rachel', 

                   'author_last_name': 'gottschalk', 

                   'institution':  'university of pittsburgh at pittsburgh',

                   'publication_year': 2022

                   }

response = apis.query_pubmed_api(search_criteria=search_criteria)

```