https://github.com/neuralensemble/neurotune

Package for fitting/optimization of NeuroML models
https://github.com/neuralensemble/neurotune

computational-neuroscience evolutionary-algorithm model-fitting neuroml python

Last synced: about 2 months ago
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Package for fitting/optimization of NeuroML models

• Host: GitHub
• URL: https://github.com/neuralensemble/neurotune
• Owner: NeuralEnsemble
• License: bsd-3-clause
• Created: 2012-07-16T03:51:29.000Z (over 13 years ago)
• Default Branch: master
• Last Pushed: 2025-04-10T17:41:23.000Z (8 months ago)
• Last Synced: 2025-09-28T18:27:26.228Z (3 months ago)
• Topics: computational-neuroscience, evolutionary-algorithm, model-fitting, neuroml, python
• Language: Python
• Homepage: https://docs.neuroml.org/Userdocs/OptimisingNeuroMLModels.html
• Size: 2.24 MB
• Stars: 18
• Watchers: 6
• Forks: 11
• Open Issues: 2
• Metadata Files:
  • Readme: README.md
  • License: LICENSE
  • Authors: AUTHORS

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README

          
# Neurotune

[![GH Build](https://github.com/NeuralEnsemble/neurotune/actions/workflows/ci.yml/badge.svg)](https://github.com/NeuralEnsemble/neurotune/actions/workflows/ci.yml)

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This package provides **Neurotune**, a package for optimizing electical models of excitable cells.

**This package was originally developed by [Mike Vella](https://github.com/vellamike). This has been updated by [Padraig Gleeson](https://github.com/pgleeson) and others (and moved to [NeuralEnsemble](https://github.com/NeuralEnsemble)) to continue development of [pyelectro](https://github.com/NeuralEnsemble/pyelectro) and [Neurotune](https://github.com/NeuralEnsemble/neurotune) for use in [OpenWorm](http://www.openworm.org/), [Open Source Brain](http://opensourcebrain.org/) and other projects**

Full documentation can be found [here](http://neurotune.readthedocs.io/en/latest/).

## Installation

Install Neurotune with the following command:

```

sudo pip install .

```

The developer dependencies can be installed using the `dev` extra:

```

sudo pip install .[dev]

```

The [CI script](https://github.com/NeuralEnsemble/neurotune/blob/master/.github/workflows/ci.yml) shows the full set of commands for installation & execution of a number of examples.