https://github.com/neurogenomics/peakyfinders
R package for mining, calling, and importing epigenomic peaks.
https://github.com/neurogenomics/peakyfinders
encode epigenomics gene-expression-omnibus genomics peak-calling r r-package
Last synced: about 2 months ago
JSON representation
R package for mining, calling, and importing epigenomic peaks.
- Host: GitHub
- URL: https://github.com/neurogenomics/peakyfinders
- Owner: neurogenomics
- Created: 2022-05-20T21:28:02.000Z (about 3 years ago)
- Default Branch: master
- Last Pushed: 2024-10-02T20:11:53.000Z (8 months ago)
- Last Synced: 2025-02-08T17:16:49.812Z (4 months ago)
- Topics: encode, epigenomics, gene-expression-omnibus, genomics, peak-calling, r, r-package
- Language: R
- Homepage: https://neurogenomics.github.io/PeakyFinders
- Size: 1.5 MB
- Stars: 1
- Watchers: 1
- Forks: 0
- Open Issues: 7
-
Metadata Files:
- Readme: README.Rmd
Awesome Lists containing this project
README
---
title: ""
author: "`r rworkflows::use_badges()`"
date: "
README updated: `r format( Sys.Date(), '%b-%d-%Y')`
"
output:
github_document
---
```{r, echo=FALSE, include=FALSE}
pkg <- read.dcf("DESCRIPTION", fields = "Package")[1]
title <- read.dcf("DESCRIPTION", fields = "Title")[1]
description <- read.dcf("DESCRIPTION", fields = "Description")[1]
URL <- read.dcf('DESCRIPTION', fields = 'URL')[1]
owner <- tolower(strsplit(URL,"/")[[1]][4])
```
## ``r pkg``: `r title`
`r description`
If you use ``r pkg``, please cite:
> `r utils::citation(pkg)$textVersion`
## Installation
```R
if(!require("remotes")) install.packages("remotes")
remotes::install_github("`r URL`")
library(`r pkg`)
```
## Documentation
### [Website](https://`r owner`.github.io/`r pkg`)
### [Getting started](https://`r owner`.github.io/`r pkg`/articles/`r pkg`)
## Contact
### [Neurogenomics Lab](https://www.neurogenomics.co.uk/)
UK Dementia Research Institute
Department of Brain Sciences
Faculty of Medicine
Imperial College London
[GitHub](https://github.com/neurogenomics)
[DockerHub](https://hub.docker.com/orgs/neurogenomicslab)