https://github.com/neuropycon/graphpype
Neuropycon package of functions for electrophysiology analysis, can be used from ephypype and nipype
https://github.com/neuropycon/graphpype
connectivity electrophysiology graph-analysis
Last synced: 3 months ago
JSON representation
Neuropycon package of functions for electrophysiology analysis, can be used from ephypype and nipype
- Host: GitHub
- URL: https://github.com/neuropycon/graphpype
- Owner: neuropycon
- License: bsd-3-clause
- Created: 2017-05-26T15:45:44.000Z (about 9 years ago)
- Default Branch: master
- Last Pushed: 2022-04-12T14:59:30.000Z (about 4 years ago)
- Last Synced: 2024-04-16T04:16:54.117Z (about 2 years ago)
- Topics: connectivity, electrophysiology, graph-analysis
- Language: Python
- Homepage: https://neuropycon.github.io/graphpype/
- Size: 35.3 MB
- Stars: 21
- Watchers: 7
- Forks: 11
- Open Issues: 5
-
Metadata Files:
- Readme: README.rst
- License: LICENSE
Awesome Lists containing this project
README
.. image:: https://travis-ci.org/neuropycon/graphpype.svg?branch=master
:target: https://travis-ci.org/neuropycon/graphpype
.. image:: https://codecov.io/gh/neuropycon/graphpype/branch/master/graph/badge.svg #noqa
:target: https://codecov.io/gh/neuropycon/graphpype
.. image:: https://zenodo.org/badge/92525686.svg
:target: https://zenodo.org/badge/latestdoi/92525686
graphpype
=========
Neuropycon project for graph analysis, can be used from ephypype and nipype
Documentation
-------------
https://neuropycon.github.io/graphpype/
Installation
------------
pip install https://api.github.com/repos/neuropycon/graphpype/zipball/master
Or with pip:
pip install graphpype
Radatools
---------
You should add all the directories from radatools to the PATH env variable:
1. Download radatools sotware:
http://deim.urv.cat/~sergio.gomez/radatools.php#download
2. Download and extract the zip file
3. Add following lines in your .bashrc:
For radatools 3.2
******************
RADA_PATH=/home/david/Tools/Software/radatools-3.2-linux32
(replace /home/david/Tools/Software by your path to radatools)
export PATH=$PATH:$RADA_PATH/01-Prepare_Network/
export PATH=$PATH:$RADA_PATH/02-Find_Communities/
export PATH=$PATH:$RADA_PATH/03-Reformat_Results
export PATH=$PATH:$RADA_PATH/04-Other_Tools/
For radatools 4.0
*****************
RADA_PATH=/home/david/Tools/Software/radatools-4.0-linux64
(replace /home/david/Tools/Software by your path to radatools)
export PATH=$PATH:$RADA_PATH/Network_Tools
export PATH=$PATH:$RADA_PATH/Network_Properties
export PATH=$PATH:$RADA_PATH/Communities_Detection
export PATH=$PATH:$RADA_PATH/Communities_Tools
For radatools 5.0
*****************
RADA_PATH=/home/david/Tools/Software/radatools-5.0-linux64
(replace /home/david/Tools/Software by your path to radatools)
export PATH=$PATH:$RADA_PATH/Network_Tools
export PATH=$PATH:$RADA_PATH/Network_Properties
export PATH=$PATH:$RADA_PATH/Communities_Detection
export PATH=$PATH:$RADA_PATH/Communities_Tools