https://github.com/nextstrain/seasonal-cov
Nextstrain build for seasonal coronaviruses
https://github.com/nextstrain/seasonal-cov
nextstrain pathogen
Last synced: about 1 year ago
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Nextstrain build for seasonal coronaviruses
- Host: GitHub
- URL: https://github.com/nextstrain/seasonal-cov
- Owner: nextstrain
- Created: 2023-10-11T21:43:00.000Z (almost 3 years ago)
- Default Branch: main
- Last Pushed: 2025-06-02T22:36:07.000Z (about 1 year ago)
- Last Synced: 2025-06-03T12:34:33.383Z (about 1 year ago)
- Topics: nextstrain, pathogen
- Language: Python
- Homepage: https://nextstrain.org/seasonal-cov/
- Size: 2.4 MB
- Stars: 1
- Watchers: 11
- Forks: 0
- Open Issues: 1
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Metadata Files:
- Readme: README.md
Awesome Lists containing this project
README
# Seasonal Coronaviruses
Phylogenies of human seasonal coronaviruses.
Built starting from the [Nextstrain pathogen repository template][].
[Nextstrain pathogen repository template]: https://github.com/nextstrain/pathogen-repo-guide/
## Working on this repo
This repo is configured to use [pre-commit](https://pre-commit.com),
to help automatically catch common coding errors and syntax issues
with changes before they are committed to the repo.
.
If you will be writing new code or otherwise working within this repo,
please do the following to get started:
1. install `pre-commit` by running either `python -m pip install
pre-commit` or `brew install pre-commit`, depending on your
preferred package management solution
2. install the local git hooks by running `pre-commit install` from
the root of the repo
3. when problems are detected, correct them in your local working tree
before committing them.
Note that these pre-commit checks are also run in a GitHub Action when
changes are pushed to GitHub, so correcting issues locally will
prevent extra cycles of correction.