https://github.com/nf-cmgg/structural

A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region expansions (RREs) from short DNA reads
https://github.com/nf-cmgg/structural

annotation cnv cram nextflow-pipeline ngs ngs-pipeline repeats short-reads structural-variation

Last synced: 3 months ago
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A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region expansions (RREs) from short DNA reads

• Host: GitHub
• URL: https://github.com/nf-cmgg/structural
• Owner: nf-cmgg
• License: mit
• Created: 2022-06-22T05:49:47.000Z (almost 4 years ago)
• Default Branch: master
• Last Pushed: 2026-02-23T13:58:00.000Z (4 months ago)
• Last Synced: 2026-02-23T21:42:53.014Z (4 months ago)
• Topics: annotation, cnv, cram, nextflow-pipeline, ngs, ngs-pipeline, repeats, short-reads, structural-variation
• Language: Nextflow
• Homepage: https://nf-cmgg.github.io/structural/
• Size: 6.85 MB
• Stars: 27
• Watchers: 6
• Forks: 3
• Open Issues: 18
• Metadata Files:
  • Readme: README.md
  • Changelog: CHANGELOG.md
  • Contributing: .github/CONTRIBUTING.md
  • License: LICENSE

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README

          
# nf-cmgg/structural

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## Introduction

**nf-cmgg/structural** is a bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region expansions (RREs) from short DNA reads. The pipeline handles the calling of the variants and postprocessing (filtering, annotating...)

Please have a look at the [documentation](https://nf-cmgg.github.io/structural/latest/) on how to run the pipeline