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https://github.com/nf-core/sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
https://github.com/nf-core/sarek
annotation bioinformatics cancer conda containers gatk4 genomics germline next-generation-sequencing nextflow nf-core pipeline pre-processing reproducible-research somatic target-panels variant-calling whole-exome-sequencing whole-genome-sequencing workflow
Last synced: 5 days ago
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Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
- Host: GitHub
- URL: https://github.com/nf-core/sarek
- Owner: nf-core
- License: mit
- Created: 2019-04-30T15:43:00.000Z (over 5 years ago)
- Default Branch: master
- Last Pushed: 2024-10-29T08:29:32.000Z (13 days ago)
- Last Synced: 2024-10-29T09:50:11.402Z (13 days ago)
- Topics: annotation, bioinformatics, cancer, conda, containers, gatk4, genomics, germline, next-generation-sequencing, nextflow, nf-core, pipeline, pre-processing, reproducible-research, somatic, target-panels, variant-calling, whole-exome-sequencing, whole-genome-sequencing, workflow
- Language: Nextflow
- Homepage: https://nf-co.re/sarek
- Size: 87.7 MB
- Stars: 404
- Watchers: 134
- Forks: 407
- Open Issues: 287
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Metadata Files:
- Readme: README.md
- Changelog: CHANGELOG.md
- Contributing: .github/CONTRIBUTING.md
- License: LICENSE
- Code of conduct: CODE_OF_CONDUCT.md
- Citation: CITATIONS.md
- Codeowners: .github/CODEOWNERS