https://github.com/ngless-toolkit/ngless-contrib
A collection of NGLess modules open to community contributions
https://github.com/ngless-toolkit/ngless-contrib
bioinformatics metagenomics ngless pipeline
Last synced: 4 months ago
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A collection of NGLess modules open to community contributions
- Host: GitHub
- URL: https://github.com/ngless-toolkit/ngless-contrib
- Owner: ngless-toolkit
- Created: 2018-05-02T10:15:30.000Z (about 7 years ago)
- Default Branch: master
- Last Pushed: 2023-08-30T07:33:10.000Z (almost 2 years ago)
- Last Synced: 2024-03-26T23:13:22.080Z (about 1 year ago)
- Topics: bioinformatics, metagenomics, ngless, pipeline
- Language: Shell
- Homepage: http://ngless.embl.de
- Size: 72.3 KB
- Stars: 3
- Watchers: 4
- Forks: 2
- Open Issues: 2
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Metadata Files:
- Readme: README.md
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README
# NGLess - External modules & community contributions
In this repository you can find [external modules](http://ngless.embl.de/modules.html) for [NGLess](https://github.com/BigDataBiology/ngless).
External modules are thin wrappers around different tools, making them convenient to integrate into NGLess scripts.
## Install
For a quick installation of all modules, clone this repository to some location on your computing servers and use the `install.sh` script provided.
Symbolic links will be created in NGLess' user external module folder pointing to each module and version present in this repository.
## Contributing
If you would like to have your favorite tool available in NGLess, [let us know](https://github.com/BigDataBiology/ngless_external_modules/issues) or open a [pull request](https://github.com/BigDataBiology/ngless_external_modules/pulls)
## Documentation
You can find a `README.md` file inside each external module containing an example script and a table with the arguments that can be passed to the provided NGLess functions.