https://github.com/nhejazi/pub_medshift_interv_biostats

Source files for reproducing results reported in the manuscript "Nonparametric Causal Mediation Analysis for Stochastic Interventional (In)Direct Effects" (N.S. Hejazi, K.E. Rudolph, M.J. van der Laan, I. Díaz, Biostatistics, 2022)
https://github.com/nhejazi/pub_medshift_interv_biostats

causal-inference interventional-effects manuscript mediation-analysis stochastic-interventions

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Source files for reproducing results reported in the manuscript "Nonparametric Causal Mediation Analysis for Stochastic Interventional (In)Direct Effects" (N.S. Hejazi, K.E. Rudolph, M.J. van der Laan, I. Díaz, Biostatistics, 2022)

• Host: GitHub
• URL: https://github.com/nhejazi/pub_medshift_interv_biostats
• Owner: nhejazi
• Created: 2022-01-07T04:55:19.000Z (almost 3 years ago)
• Default Branch: master
• Last Pushed: 2022-07-17T20:13:34.000Z (over 2 years ago)
• Last Synced: 2024-01-27T08:02:59.511Z (11 months ago)
• Topics: causal-inference, interventional-effects, manuscript, mediation-analysis, stochastic-interventions
• Language: R
• Homepage:
• Size: 4.16 MB
• Stars: 1
• Watchers: 2
• Forks: 1
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

        
Code to reproduce the results reported in ["Nonparametric causal mediation

analysis for stochastic interventional (in)direct

effects"](https://arxiv.org/abs/2009.06203) by [N.S.

Hejazi](https://nimahejazi.org/), [K.E.

Rudolph](https://kararudolph.github.io/), [M.J. van der

Laan](https://vanderlaan-lab.org/), and [I. Díaz](https://www.idiaz.xyz/) in

_Biostatistics_ (2022)

* To reproduce the simulation study reported in the manuscript, examine the

  `simulation` subdirectory and the comments in the included `README.md`.

* To assess the data analysis results reported in the manuscript, examine the

  `application` subdirectory and the code it contains. The data from the X:BOT

  trial has not (yet) been released due to data sharing agreements; however,

  the exact `R` code applied to the dataset is included in this subdirectory.

Note that both directories reference the `intmedlite` auxiliary `R` package,

which provides the estimation machinery used for the both the simulation studies

and real-world data analysis. To support accessibility of the methodology, the

functionality from this auxiliary package is presently in the process of being

incorporated into our [`medshift` package](https://github.com/nhejazi/medshift);

this note will be updated to point to that functionality once initial

integration and testing have been completed.

Should any concerns arise, please [file an

issue](https://github.com/nhejazi/pub_medshift_interv_biostats/issues/new) with

a clear description of the problem encountered.