https://github.com/niaid/ace-2021-uganda-fall
African Centers of Excellence (ACE) Training for 2021
https://github.com/niaid/ace-2021-uganda-fall
ace africa bcbb-training bioinformatics sequenching uganda
Last synced: 4 months ago
JSON representation
African Centers of Excellence (ACE) Training for 2021
- Host: GitHub
- URL: https://github.com/niaid/ace-2021-uganda-fall
- Owner: niaid
- License: mit
- Created: 2021-10-25T16:51:32.000Z (over 4 years ago)
- Default Branch: main
- Last Pushed: 2022-01-25T22:08:42.000Z (over 4 years ago)
- Last Synced: 2025-10-07T08:44:27.601Z (8 months ago)
- Topics: ace, africa, bcbb-training, bioinformatics, sequenching, uganda
- Homepage: https://niaid.github.io/ACE-2021-Uganda-Fall/
- Size: 8.79 KB
- Stars: 1
- Watchers: 5
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
Awesome Lists containing this project
README
# ACE 2021 Uganda Fall Training
# SCHEDULE
| BCBB Instructor | Subject | Topics | Date |
| --------------- | -------------------------------------------------------------------- | ------------------------------------------------------------------------------------------------------------- | ----------- |
| David Stern | Population Genetics & Genomics | Hardy-Weinberg Equilibrium ( [Materials](https://github.com/niaid/nbp_training_resources/blob/master/ace/population_genetics/HWE_Structure.ACE_Fall2021.zip), [Video](https://youtu.be/NzBXOXTPsrk) ) | 21-Oct-2021 |
| Kurt Wollenberg | Principles of Sequence analysis and Phylogenetics | Dynamic programming and Alignment algorithms ( [Materials](https://github.com/niaid/nbp_training_resources/blob/master/ace/seq_analysis_phylogenetics/DynProgAlignAlgorithmsFall2021.zip), Video ) | 25-Oct-2021 |
| Kurt Wollenberg | Molecular Evolution | Calculating evolutionary distances among sequences and correction models ( [Materials](https://github.com/niaid/nbp_training_resources/blob/master/ace/molecular_evolution/EvolutionaryDistancesCorrectionModels.zip), [Video](https://youtu.be/gswmgm87NQI) ) | 1-Nov-2021 |
| Eric Karlins | Population Genetics & Genomics | GWAS tutorial ( [Materials](https://github.com/niaid/ACE/tree/master/GWAS), [Video](https://youtu.be/WtfVsb5lu-w) ) | 4-Nov-2021 |
| Hernan Lorenzi | Systems Biology 2 | Cytoscape - StringApp ( [Materials](https://github.com/niaid/nbp_training_resources/blob/master/ace/system_biology/cytoscape-2.zip), [Video](https://youtu.be/WrXyfiaTM7M) ) | 8-Nov-2021 |
| Burke Squires | BioPython | Introduction to BioPython ( [Materials](https://github.com/niaid/nbp_training_resources/blob/master/ace/biopython/biopython-notebook.zip), [Video](https://youtu.be/EsFB2SExL7o) ) | 10-Nov-2021 |
| Kurt Wollenberg | Principles of Sequence analysis and Phylogenetics | Introduction to phylogenetics and phylogenetic tree inference methods (e.g. parsimony and Maximum Likelihood) ( Materials, [Video](https://youtu.be/GIM3_NH-0A8) ) | 15-Nov-2021 |
| Andrew Oler | Population Genetics & Genomics | Genetic Linkage Analysis and homozygosity mapping ( Materials, [Video](https://youtu.be/dfFKadSnRmc) ) | 30-Nov-2021 |
| Burke Squires | Systems Biology 2 | Reactome Tutorial of Biological Networks ( Materials, Video ) | 1-Dec-2021 |
| Isaac Raplee | Disease Dynamics and Modelling | Modelling the transmission of STIs ( [Materials](https://github.com/niaid/nbp_training_resources/blob/master/ace/disease_dynamics/ACE_Uganda_Modeling_epispot.zip), [Video](https://youtu.be/gQvX9roYFgc) ) | 2-Dec-2021 |
| Kurt Wollenberg | Principles of Sequence analysis and Phylogenetics | Coalescent analysis and populations ( Materials, [Video](https://youtu.be/0i60Rmf4BXs) ) | 6-Dec-2021 |
| Burke Squires | BioPython | Bio.PopGen: Population genetics ( Materials, [Video](https://youtu.be/C-JDWZZMcLg) ) | 8-Dec-2021 |
| Burke Squires | BioPython | Graphics including GenomeDiagram ( Materials, [Video](https://youtu.be/Uej3QAPu0TQ) ) | 15-Dec-2021 |
| Dan Veltri | Big Bio-data Analysis (Artificial Intelligence and Machine Learning) | Intro to Deep Learning (TensorFlow and Keras) ( Materials, Video ) | ? |
# INSTRUCTORS
Computational Biology Specialists from the National Institute of Allergy and Infectious Diseases (NIAID) will be teaching courses on bioinformatics topics and biocomputing tools.
- Eric Karlins, Ph.D.\*
- Hernan Lorenzi, Ph.D.\*
- Andrew Oler, Ph.D.
- Isaac Raplee,Ph.D.\*
- R. Burke Squires, M.S.\*
- David Stern, Ph.D.\*
- Dan Veltri, Ph.D.
- Kurt Wollenberg, Ph.D.\*
\* Instructors provide bioinformatics support at the NIAID as employees of Medical Science and Computing, Inc.