https://github.com/nighres/nighres

Processing tools for high-resolution neuroimaging
https://github.com/nighres/nighres

Last synced: 1 day ago
JSON representation

Processing tools for high-resolution neuroimaging

• Host: GitHub
• URL: https://github.com/nighres/nighres
• Owner: nighres
• License: apache-2.0
• Created: 2017-05-10T23:20:27.000Z (over 7 years ago)
• Default Branch: master
• Last Pushed: 2024-10-21T10:18:03.000Z (23 days ago)
• Last Synced: 2024-10-21T14:55:35.571Z (23 days ago)
• Language: Python
• Homepage: http://nighres.readthedocs.io/en/latest/
• Size: 53.1 MB
• Stars: 63
• Watchers: 10
• Forks: 41
• Open Issues: 27
• Metadata Files:
  • Readme: README.rst
  • Contributing: CONTRIBUTING.md
  • License: LICENSE

Awesome Lists containing this project

README

        
.. -*- mode: rst -*-

.. image:: https://github.com/nighres/nighres/actions/workflows/build.yml/badge.svg

    :target: https://github.com/nighres/nighres/actions/workflows/build.yml

    :alt: Build and test Status

.. image:: https://readthedocs.org/projects/nighres/badge/?version=latest

    :target: http://nighres.readthedocs.io/en/latest/?badge=latest

    :alt: Documentation Status

Nighres

=======

Nighres is a Python package for processing of high-resolution neuroimaging data.

It developed out of `CBS High-Res Brain Processing Tools

`_ and aims to make those

tools easier to install, use and extend. Nighres now includes new functions from

the `IMCN imaging toolkit `_ and

additional packages may be added in future releases.

Because parts of the package have to be built locally it is currently not possible to

use ``pip install`` directly from PyPI. Instead, please follow the installation

instructions provided at http://nighres.readthedocs.io/en/latest/installation.html

Currently, Nighres is developed and tested on Linux Ubuntu Trusty and Python 3.5.

Release versions have been extensively tested on our example data. Development

versions include additional modules and functions but with limited guarantees.

Required packages

=================

In order to run Nighres, you will need:

* python >= 3.8

* Java JDK >= 1.7

* JCC >= 3.0

For more information on how to install Nighres or use its docker version, please see

the `installation page of the documentation`_.

If you use nighres, please reference the publication:

Huntenburg JM, Steele CJ, Bazin P-L (2018) Nighres: processing tools for high-resolution neuroimaging. Gigascience 7 Available at: https://academic.oup.com/gigascience/article/7/7/giy082/5049008