https://github.com/nimble-dev/nimbleecology
https://github.com/nimble-dev/nimbleecology
Last synced: 12 months ago
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- Host: GitHub
- URL: https://github.com/nimble-dev/nimbleecology
- Owner: nimble-dev
- Created: 2018-07-12T19:10:23.000Z (almost 8 years ago)
- Default Branch: master
- Last Pushed: 2025-05-09T14:57:03.000Z (12 months ago)
- Last Synced: 2025-05-09T15:49:47.716Z (12 months ago)
- Language: R
- Size: 992 KB
- Stars: 18
- Watchers: 8
- Forks: 8
- Open Issues: 8
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Metadata Files:
- Readme: README.md
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README
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# Distributions for Ecological Models in 'nimble'
This repository provides user-defined distributions that can be used in NIMBLE models for common population ecology statistical models. These include distributions for:
* basic capture-recapture distributions (Cormack-Jolly-Seber),
* hidden Markov model distributions for multi-state and multi-event capture-recapture models,
* occupancy models,
* dynamic occupancy models, and
* N-mixture models.
Community contributions or suggestions for other needs are welcome.
Some of these models were used (in slightly different forms) in:
[D. Turek, P. de Valpine, and C. J. Paciorek. 2016. Efficient Markov chain Monte Carlo sampling for hierarchical hidden Markov models. Environmental and Ecological Statistics 4:549-564](https://link.springer.com/article/10.1007/s10651-016-0353-z).