https://github.com/njlyon0/lter_silica-high-latitude
Repository for the River Silica Export Cryosphere paper
https://github.com/njlyon0/lter_silica-high-latitude
Last synced: 3 months ago
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Repository for the River Silica Export Cryosphere paper
- Host: GitHub
- URL: https://github.com/njlyon0/lter_silica-high-latitude
- Owner: njlyon0
- Created: 2022-07-20T15:20:11.000Z (almost 3 years ago)
- Default Branch: main
- Last Pushed: 2024-05-22T17:25:41.000Z (about 1 year ago)
- Last Synced: 2024-05-22T22:38:54.905Z (about 1 year ago)
- Language: R
- Homepage:
- Size: 390 KB
- Stars: 4
- Watchers: 2
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
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README
# High Latitude Silica Exports
- Primary Investigators: Joanna Carey & Kathi Jo Jankowski
- [Project Summary](https://lternet.edu/working-groups/river-si-exports/)
- [Participant Information](https://www.nceas.ucsb.edu/projects/12816)
## Repository Explanation
This repository contains the code needed for one sub-project created by the Long Term Ecological Research (LTER) synthesis working group: **"[From poles to tropics](https://www.nceas.ucsb.edu/workinggroups/lter-si-exports): A multi-biome synthesis investigating the controls on river Si exports"**
## Script Explanations
The 'core' scripts in this repository are described below. Any script not described below is exploratory and should be treated as such.
- **`00_data-download.R`** - Downloads the various source data from this working group's Shared Google Drive. Note that only those with access to that Drive will be able to run the script.
- **`01_sizer-workflow.R`** - Runs SiZer workflow to identify changes in slope for WRTDS time series. Works for monthly, seasonal (averaged across sub-season months), and annual input data.
- Assumes you have either run `00_data-download.R` or manually put the needed input files in a folder named "data"
- **`02_stats-prep.R`** - Combines various data files and calculates covariate columns likely to be useful in the analysis script. Just like `01_sizer-workflow.R`, works for annual/seasonal/monthly input data
- Assumes you have run `01_sizer-workflow.R`
- **`03a_stats.R`** - Performs desired statistical analysis
- Assumes you have run `02_stats-prep.R`
- **`03b_explore-graphs.R`** - Makes exploratory (i.e., not necessarily publication-quality) graphs of extracted SiZer information. Works for annual/seasonal/monthly input data
- Assumes you have run `02_stats-prep.R`
- **`03c_site-map.R`** - Creates a map of the sites with an included permafrost raster for additional context. Also points are colored by mean Si concentration.
- Assumes you have either run `00_data-download.R` _and_ `02_stats-prep.R`
- **`04_figures.R`** - Makes publication-quality figures from extracted SiZer information. Written for _only annual_ data
- Assumes you have run `02_stats-prep.R`
- **`05_tables.R`** - Generates publication-quality summary tables
- Assumes you have run `03a_stats.R`
## Related Repositories
This working group has several repositories. All are linked and described (briefly) below.
- [lter/**lterwg-silica-data**](https://github.com/lter/lterwg-silica-data) - Primary data wrangling / tidying repository for "master" data files
- [SwampThingPaul/**SiSyn**](https://github.com/SwampThingPaul/SiSyn) - Original repository for this working group. Performs many functions from data wrangling through analysis and figure creation
- [lsethna/**NCEAS_SiSyn_CQ**](https://github.com/lsethna/NCEAS_SiSyn_CQ) - Examples concentration (C) and discharge (Q) relationships for a wide range of solutes
- [lter/**lterwg-silica-spatial**](https://github.com/lter/lterwg-silica-spatial) - Extracts spatial and climatic information from within watershed shapefiles
- [njlyon0/**lter_silica-high-latitude**](https://github.com/njlyon0/lter_silica-high-latitude) - Performs analysis and visualization for the high latitude manuscript