https://github.com/noresmhub/noresmcam_docker
Test a simple NorESM-CAM configuration with docker
https://github.com/noresmhub/noresmcam_docker
climate docker noresm
Last synced: about 1 month ago
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Test a simple NorESM-CAM configuration with docker
- Host: GitHub
- URL: https://github.com/noresmhub/noresmcam_docker
- Owner: NorESMhub
- License: mit
- Created: 2019-11-12T09:40:10.000Z (over 5 years ago)
- Default Branch: master
- Last Pushed: 2021-02-16T20:10:58.000Z (over 4 years ago)
- Last Synced: 2025-02-17T16:41:19.252Z (4 months ago)
- Topics: climate, docker, noresm
- Language: Dockerfile
- Homepage:
- Size: 31.3 KB
- Stars: 0
- Watchers: 4
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
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README
# NorESM_docker
Test a simple NorESM configuration with docker
NorESM docker container for 1850_CAM60%NORESM_CLM50%SP_CICE%PRES_DOCN%DOM_MOSART_SGLC_SWAV compset and resolution f19_tn14.
- A tarbal was prepared for this particular simulation with all the necessary input dataset and it is available on zenodo (3.1 GB)
[](https://doi.org/10.5281/zenodo.4501307)
## Running NorESM-CAM6 with docker
### NorESM source code
The [NorESM](https://noresm-docs.readthedocs.io/en/latest) source code is now freely available from https://github.com/NorESMhub
```
mkdir -p /opt/uio/packages
cd /opt/uio/packages
git clone -b release-noresm2.0.2 https://github.com/NorESMhub/NorESM.git
cd NorESM
rm -rf manage_externals
git clone -b manic-v1.1.8 https://github.com/ESMCI/manage_externals.git
sed -i.bak "s/'checkout'/'checkout', '--trust-server-cert', '--non-interactive'/" ./manage_externals/manic/repository_svn.py
./manage_externals/checkout_externals -v
```
The NorESM source code is then passed to the docker container for running norESM.
### NorESM docker
Make sure inputdata and norESM source code are available (it won't download them as we suppose they both are already on disk).
- The location of the inputdata is `/opt/uio/inputdata`
- The location of the norESM source code is `/opt/uio/packages/noresm-dev`
- Model outputs are stored in `/opt/uio/archive` along with the `case` folder (it can be interesting to check timing).
**Important**: the folder /opt/uio/archive needs to be writable by unix group `users` (see Dockerfile) otherwise you will get a permission denied when running.
```
sudo chgrp -R users /opt/uio/archive
sudo chmod -R g+w /opt/uio/archive
```
You can check it:
```
ls -lrt /opt/uio | grep archive
```
You should have:
```
drwxrwxr-x. 8 centos users 4096 Nov 9 15:21 archive
```
### Pull and run images
```
docker pull nordicesmhub/noresm:latest
docker run --shm-size 8G -i -v /opt/uio/inputdata:/home/cesm/inputdata -v /opt/uio/archive:/home/cesm/archive \
-v /opt/uio/packages:/home/cesm/packages -t nordicesmhub/noresm:latest
```
- Here we are running a 5 days simulation using only 4 processors (which is really not much), and with this configuration we allocate 2GB per processor (this typically makes it possible to run on a laptop/desktop)
- The case directory will remain available outside the container (in a folder called for thie example /opt/uio/archive/cases/cN1850)
```
total pes active : 4
mpi tasks per node : 4
pe count for cost estimate : 4
Overall Metrics:
Model Cost: 655.24 pe-hrs/simulated_year
Model Throughput: 0.15 simulated_years/day
Init Time : 375.254 seconds
Run Time : 8078.297 seconds 1615.659 seconds/day
Final Time : 1.535 seconds
```
You can now exit the container.
### To return into the same container
Find the Container ID:
```
docker ps --all
CONTAINER ID IMAGE COMMAND CREATED STATUS PORTS NAMES
d40294d23839 nordicesmhub/noresm:latest "/bin/bash" 25 minutes ago Exited (0) 59 seconds ago objective_meitner
```
Then execute:
```
docker start d40294d23839
d40294d23839
```
You can check that the container is now up again:
```
docker ps --all
CONTAINER ID IMAGE COMMAND CREATED STATUS PORTS NAMES
d40294d23839 nordicesmhub/noresm:latest "/bin/bash" 25 minutes ago Up 2 seconds objective_meitner
```
and go back into it by typing:
```
docker exec -it d40294d23839 bash
cesm@d40294d23839:~$ ls
archive cases inputdata packages run_noresm work
```