https://github.com/novoalab/nanoRMS

Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* et al., Nature Biotech 2021)
https://github.com/novoalab/nanoRMS

predict-rna-modifications rna-modification-stoichiometry tombo-resquiggling

Last synced: 2 months ago
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Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* et al., Nature Biotech 2021)

• Host: GitHub
• URL: https://github.com/novoalab/nanoRMS
• Owner: novoalab
• Created: 2020-07-26T22:08:10.000Z (over 4 years ago)
• Default Branch: master
• Last Pushed: 2022-12-21T12:05:54.000Z (about 2 years ago)
• Last Synced: 2024-08-03T23:18:09.581Z (5 months ago)
• Topics: predict-rna-modifications, rna-modification-stoichiometry, tombo-resquiggling
• Language: Jupyter Notebook
• Homepage:
• Size: 115 MB
• Stars: 23
• Watchers: 7
• Forks: 11
• Open Issues: 3
• Metadata Files:
  • Readme: README.md

Awesome Lists containing this project

• awesome-nanopore - nanoRMS - [Python] - [Quantitative profiling of pseudouridylation dynamics in native RNAs with nanopore sequencing](https://www.nature.com/articles/s41587-021-00915-6?proof=t%3B). (Software packages / RNA modification analysis)