https://github.com/npavlovikj/pegasus-hcc-test

https://github.com/npavlovikj/pegasus-hcc-test

Last synced: about 2 months ago
JSON representation

• Host: GitHub
• URL: https://github.com/npavlovikj/pegasus-hcc-test
• Owner: npavlovikj
• License: gpl-3.0
• Created: 2019-10-14T19:51:08.000Z (over 5 years ago)
• Default Branch: master
• Last Pushed: 2020-03-27T17:41:31.000Z (about 5 years ago)
• Last Synced: 2025-01-30T01:27:54.161Z (4 months ago)
• Language: Python
• Size: 37.1 KB
• Stars: 0
• Watchers: 2
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

Awesome Lists containing this project

README

        
# Running population genomics analysis of bacteria using Pegasus workflow (workflow of workflows) utilizing High Performance Computing.

## Running the workflow on HCC, https://hcc.unl.edu:

To run the worflow on HCC, please clone the repo.

All the analysis are run from the repo directory.

The user needs to do only 2 modifications:

- replace `BacGenPop` in `tx.txt` and `rc.txt` with the absolute path of the current directory

- add the SRA ids in `sra_ids.txt`

## NOTE: This is a test workflow of workflows for HCC purposes.