https://github.com/nuno-agostinho/rsem-docker
Docker to run RSEM for transcript quantification
https://github.com/nuno-agostinho/rsem-docker
docker quantification rsem transcript
Last synced: 10 months ago
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Docker to run RSEM for transcript quantification
- Host: GitHub
- URL: https://github.com/nuno-agostinho/rsem-docker
- Owner: nuno-agostinho
- Created: 2017-09-07T16:12:52.000Z (over 8 years ago)
- Default Branch: master
- Last Pushed: 2017-09-07T16:16:48.000Z (over 8 years ago)
- Last Synced: 2025-05-04T00:28:46.068Z (about 1 year ago)
- Topics: docker, quantification, rsem, transcript
- Size: 1.95 KB
- Stars: 1
- Watchers: 1
- Forks: 1
- Open Issues: 0
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Metadata Files:
- Readme: README.md
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README
# RSEM (Docker)
Docker to run RSEM for transcript quantification
## Available software
- [RSEM 1.2.31](https://deweylab.github.io/RSEM/)
- [Bowtie 1.1.2](http://bowtie-bio.sourceforge.net)
- [Bowtie2 2.2.9](http://bowtie-bio.sourceforge.net/bowtie2)
- [STAR 2.5.3a_modified](https://github.com/alexdobin/STAR)
- [SAMTOOLS 1.3.1](http://www.htslib.org)
- [C++ Boost](http://www.boost.org)
## Maintainer
[Nuno Agostinho](mailto:nunodanielagostinho@gmail.com) - [Nuno Morais Lab](http://imm.medicina.ulisboa.pt/group/compbio/), iMM (2017)