https://github.com/nylander/fasta2mlcalc

Create a distance matrix for Paul Lewis's MLCalc program from a fasta-formatted sequence file
https://github.com/nylander/fasta2mlcalc

Last synced: about 1 year ago
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Create a distance matrix for Paul Lewis's MLCalc program from a fasta-formatted sequence file

• Host: GitHub
• URL: https://github.com/nylander/fasta2mlcalc
• Owner: nylander
• License: mit
• Created: 2013-01-23T00:42:04.000Z (over 13 years ago)
• Default Branch: master
• Last Pushed: 2020-03-24T16:19:57.000Z (about 6 years ago)
• Last Synced: 2023-03-24T03:25:13.163Z (about 3 years ago)
• Language: Perl
• Size: 6.84 KB
• Stars: 0
• Watchers: 2
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

          
# Fasta2MLCalc

## Description

Create a distance matrix for Paul Lewis's MLCalc program from a fasta-formatted

sequence file

## Usage

    $ ./Fasta2MLCalc.pl input.fas > matrix.dat

Type 'perldoc Fasta2MLCalc.pl' for details.

## Files

- `Fasta2MLCalc.pl` -- Perl script

- `input.fas` -- example input file

- `matrix.dat` -- example output file

The MLCalc software can be found here (Accessed Tue 24 mar 2020 16:40:21):

## MLCalc

MLCalc is a Windows software but can be run on Linux (tested on

Xubuntu 18.04) using Wine ():

    $ wget http://hydrodictyon.eeb.uconn.edu/people/plewis/downloads/mlcalc.zip

    $ unzip mlcalc.zip

    $ cd mlcalc

    $ wine mlcalc.exe