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https://github.com/ocsmit/blsp-c
C library for Bayesian Land Surface Phenology model
https://github.com/ocsmit/blsp-c
Last synced: about 1 month ago
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C library for Bayesian Land Surface Phenology model
- Host: GitHub
- URL: https://github.com/ocsmit/blsp-c
- Owner: ocsmit
- License: mit
- Created: 2024-02-07T19:12:48.000Z (about 1 year ago)
- Default Branch: main
- Last Pushed: 2024-04-17T07:55:08.000Z (10 months ago)
- Last Synced: 2024-11-13T09:48:38.790Z (3 months ago)
- Language: C
- Homepage:
- Size: 3.05 MB
- Stars: 1
- Watchers: 1
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- Changelog: ChangeLog
- License: COPYING
- Authors: AUTHORS
Awesome Lists containing this project
README
# MCMC sampler for the Bayesian Land Surface Phenology model.
important: *This is under active development and subject to change at any point.*
This is a monorepo containing the `C` source code for a Metroplois Hastings + Gibbs MCMC sampler, and interfaces for several higher level languages.
For more info please see the paper
> Gao, X., Gray, J. M., & Reich, B. J. (2021). Long-term, medium spatial resolution annual land surface phenology with a Bayesian hierarchical model. Remote Sensing of Environment, 261, 112484. https://doi.org/10.1016/j.rse.2021.112484
and the [original algorithms git repo](https://github.com/ncsuSEAL/Bayesian_LSP).
Depends on [GNU Scientific Library](https://www.gnu.org/software/gsl/)
# Building for Linux & macOS
## Dependencies
### Autotools
Ensure that you have autotools installed.
They are required to generate the build scripts and compile the software.
On macOS this can be accomplished with homebrew.
```sh
brew install autoconf automake libtool
```
Linux systems can use their respective package managers, e.g.
```sh
# ubuntu
apt install autoconf libtool automake
```
### GNU Scientific Library
On mac
```sh
brew install gsl
```
Linux systems can use their respective package managers, e.g.
```sh
# ubuntu
apt install libgsl-dev
```
### Installing from source
Once dependencies are installed, you can build and install.
Generate the require build scripts with
```sh
./autogen.sh
```
To build and install on your system run the following
```sh
./compile
make install # May need sudo
```
This assumes that GSL is discoverable on your system (installed to a common location).
# Language bindings
- [Building R package](r/README.md)
- Python (todo)
- Julia (todo)