https://github.com/oefenweb/ansible-r

Ansible role to set up (the latest version of) R in Ubuntu systems
https://github.com/oefenweb/ansible-r

ansible cran r ubuntu

Last synced: about 6 hours ago
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Ansible role to set up (the latest version of) R in Ubuntu systems

• Host: GitHub
• URL: https://github.com/oefenweb/ansible-r
• Owner: Oefenweb
• License: mit
• Created: 2015-05-18T19:35:53.000Z (over 9 years ago)
• Default Branch: master
• Last Pushed: 2024-12-10T10:48:18.000Z (16 days ago)
• Last Synced: 2024-12-18T18:08:05.390Z (8 days ago)
• Topics: ansible, cran, r, ubuntu
• Language: R
• Homepage:
• Size: 150 KB
• Stars: 44
• Watchers: 3
• Forks: 27
• Open Issues: 6
• Metadata Files:
  • Readme: README.md
  • License: LICENSE.txt

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README

        
## r

[![CI](https://github.com/Oefenweb/ansible-r/workflows/CI/badge.svg)](https://github.com/Oefenweb/ansible-r/actions?query=workflow%3ACI)

[![Ansible Galaxy](https://img.shields.io/badge/ansible--galaxy-r-blue.svg)](https://galaxy.ansible.com/Oefenweb/latest_r/)

Set up the latest version of R in Ubuntu systems.

#### Requirements

* `littler` (will be installed)

* `bash` (will not be installed)

* `software-properties-common` (will be installed)

* `dirmngr` (will be installed)

* `apt-transport-https` (will be installed)

#### Variables

* `r_version`: [default: `34`, `35` for `Ubuntu >= 18.04`, `40` for `Ubuntu >= 20.04`]: Version to install

* `r_cran_mirror`: [default: `https://cran.rstudio.com/`]: Your favorite [CRAN mirror](https://cran.r-project.org/mirrors.html)

* `r_bioclite_url`: [default: `https://bioconductor.org/biocLite.R`]: The `biocLite.R` script URL for [Bioconductor](https://bioconductor.org/) installs

* `r_install_dev`: [default: `false`]: Whether install the `r-base-dev` package

* `r_install`: [default: `['littler']`]: Additional (apt) packages to install (e.g. `r-recommended`)

* `r_packages_lib`: [default: `/usr/local/lib/R/site-library`]: The (default) library directory to install packages to

* `r_packages_repos`: [default: `"{{ r_cran_mirror }}"`]: The (default) URL to install packages from

* `r_packages`: [default: `[]`]: (CRAN) Packages to install or remove

* `r_packages.{n}.name`: [required]: The name of the package

* `r_packages.{n}.state`: [optional, default: `present`]: The state of the package (e.g. `updated`, `absent`)

* `r_packages.{n}.type`: [optional, default: `cran`]: The type of the package (e.g. `bioconductor`)

* `r_packages.{n}.lib`: [optional, default: `r_packages_lib`]: The library directory to install the package to

* `r_packages.{n}.repos`: [optional, default: `r_packages_repos`]: The URL to install the package from

* `r_environment`: [default: `{}`]: Environment variables to set (during the installation, update or delete packages tasks)

* `r_scripts_install_path:`: [default: `/usr/local/bin`]: The path where to install the R script used to install, update and delete R package

* `r_scripts_install_owner`: [default: `root`]: The owner of the R script to install, update and delete R package

* `r_scripts_install_group`: [default: `root`]: The group of the R script to install, update and delete R package

## Dependencies

None

#### Example(s)

##### Simple

```yaml

---

- hosts: all

  roles:

    - oefenweb.r

```

##### Advanced

```yaml

---

- hosts: all

  roles:

    - oefenweb.r

  vars:

    r_install_dev: true

    # apt packages

    r_install:

      - r-recommended

    # cran, bioconductor or github (R) packages

    r_packages:

      - name: dplyr

      - name: Biobase

        type: bioconductor

      - name: mangothecat/franc

        type: github

```

#### License

MIT

#### Author Information

Mischa ter Smitten

#### Feedback, bug-reports, requests, ...

Are [welcome](https://github.com/Oefenweb/ansible-r/issues)!