https://github.com/oeway/csvexport
Converting csv file from QuickPALM or ThunderSTORM to ViSP
https://github.com/oeway/csvexport
Last synced: about 1 year ago
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Converting csv file from QuickPALM or ThunderSTORM to ViSP
- Host: GitHub
- URL: https://github.com/oeway/csvexport
- Owner: oeway
- License: cc0-1.0
- Created: 2014-11-24T09:37:46.000Z (over 11 years ago)
- Default Branch: master
- Last Pushed: 2017-09-06T15:33:48.000Z (almost 9 years ago)
- Last Synced: 2025-02-15T18:33:18.699Z (over 1 year ago)
- Language: Python
- Size: 1.22 MB
- Stars: 0
- Watchers: 3
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
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README
csvExport
=========
Converting csv file from QuickPALM or ThunderSTORM to [ViSP](http://www.nature.com/nmeth/journal/v10/n8/full/nmeth.2566.html?WT.ec_id=NMETH-201308)
## Usage
### After selected input file, you can double click on the header of the list to add columns to "Selected Columns"
Usage for visualization in ViSP:
* choose your file(csv or xls)
* for 3d visualization, fill the corresponding column number to make sure you have the column and order as "x y z intensity frame", then click "Export"
* for 2d visualization, fill the corresponding column number to make sure you have the column and order as "x y intensity frame", then click "Export"
Usage for Matlab:
* choose your file
* fill the column number you want to export to "Selected Columns"
* put "," in "Output Delimiter";
click Export, specify the extension as ".csv"
and use csvread() to load data.
data = csvread(FILE_PATH);
Example settings for convert from Vutar particle csv file format to thunderSTROM format:
* Input delimiter: ,
* Selected Column: 4, 16, 17, 18, 7
* Output delimiter: ,
* Header: frame,x [nm],y [nm],z [nm],intensity [photon]
### Parameters
* Input Delimiter: the delimiter used to separate columns, for csv and xls file, this parameter will change automatically.
* Selected Columns: the column number and order you want to have in the target file
* Output Delimiter: the delimiter of exported file used to separate columns, eg. "\t" for xls file and "," for csv file.
* Header: the output header, you can edit if you want to change for the output.
###