https://github.com/ohsu-comp-bio/funnel

Funnel is a toolkit for distributed task execution via a simple, standard API.
https://github.com/ohsu-comp-bio/funnel

aws-batch docker ga4gh google-cloud gridengine kubernetes pbs-torque slurm

Last synced: 6 months ago
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Funnel is a toolkit for distributed task execution via a simple, standard API.

• Host: GitHub
• URL: https://github.com/ohsu-comp-bio/funnel
• Owner: ohsu-comp-bio
• License: mit
• Created: 2017-02-03T23:22:07.000Z (over 8 years ago)
• Default Branch: master
• Last Pushed: 2024-04-22T11:46:06.000Z (over 1 year ago)
• Last Synced: 2024-04-22T12:59:21.939Z (over 1 year ago)
• Topics: aws-batch, docker, ga4gh, google-cloud, gridengine, kubernetes, pbs-torque, slurm
• Language: Go
• Homepage: https://ohsu-comp-bio.github.io/funnel
• Size: 45.8 MB
• Stars: 118
• Watchers: 21
• Forks: 30
• Open Issues: 115
• Metadata Files:
  • Readme: README.md
  • License: License.txt

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Funnel

======

https://ohsu-comp-bio.github.io/funnel/

Funnel is a toolkit for distributed, batch task execution, including a server, worker, and a set of compute, storage, and database backends. Given a task description, Funnel will find a worker to execute the task, download inputs, run a series of (Docker) containers, upload outputs, capture logs, and track the whole process.

Funnel is an implementation of the [GA4GH Task Execution Schemas](https://github.com/ga4gh/task-execution-schemas), an effort to standardize the APIs used for task execution across many platforms.

Funnel provides an API server, multiple storage backends (local FS, S3, Google Bucket, etc.), multiple compute backends (local, HTCondor, Google Cloud, etc.), and a web dashboard.