https://github.com/olegs/bioinformatics
Reviews on NGS data analysis methods
https://github.com/olegs/bioinformatics
atac-seq chip-seq differential-chip-seq
Last synced: 3 months ago
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Reviews on NGS data analysis methods
- Host: GitHub
- URL: https://github.com/olegs/bioinformatics
- Owner: olegs
- License: mit
- Created: 2017-02-26T19:17:39.000Z (over 8 years ago)
- Default Branch: master
- Last Pushed: 2019-05-03T18:18:18.000Z (about 6 years ago)
- Last Synced: 2025-01-18T12:12:56.727Z (5 months ago)
- Topics: atac-seq, chip-seq, differential-chip-seq
- Language: TeX
- Homepage:
- Size: 29 MB
- Stars: 6
- Watchers: 1
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
Awesome Lists containing this project
README
# Bioinformatics
Reviews on different NGS data analysis methods.
LaTeX Beamer format.
### Content
* [atacseq](https://github.com/olegs/bioinformatics/blob/master/atacseq/pipeline.pdf) - summary on ATAC-Seq processing methods
* [chipseq](https://github.com/olegs/bioinformatics/blob/master/chipseq/chipseq.pdf) - summary on ChIP-Seq processing from qc to replicated peak calling
* [differential_chipseq](https://github.com/olegs/bioinformatics/blob/master/differential_chipseq/diffchipseq.pdf) - how to compare replicated data
* [peaks](https://github.com/olegs/bioinformatics/blob/master/peaks/peaks.pdf) - notes on peaks classification by length based on small subset of [Roadmap Epigenomics](http://www.roadmapepigenomics.org/) data
### ENCODE resources
ENCODE standards
ENCODE Rest API
ENCODE DNANexus pipelines source
### Others
ChIP-seq analysis notes from Tommy Tang